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AT1G31950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.978
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Terpenoid cyclases/Protein prenyltransferases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT3G14520.1); Has 1686 Blast hits to 1660 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1682; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
EC:4.2.3.-eggNOG:ENOG410IVC5eggNOG:ENOG410YBXHEMBL:AC074309EMBL:AC079041EMBL:CP002684EnsemblPlants:AT1G31950
EnsemblPlants:AT1G31950.1entrez:840085Gene3D:1.10.600.10GeneID:840085Genevisible:Q9C6W6GO:GO:0000287GO:GO:0005737
GO:GO:0010333GO:GO:0016114Gramene:AT1G31950.1hmmpanther:PTHR31045hmmpanther:PTHR31045:SF4HOGENOM:HOG000232971InParanoid:Q9C6W6
InterPro:IPR001906InterPro:IPR005630InterPro:IPR008930InterPro:IPR008949iPTMnet:Q9C6W6KEGG:ath:AT1G31950PaxDb:Q9C6W6
Pfam:PF01397Pfam:PF03936Pfam:Q9C6W6PhylomeDB:Q9C6W6PIR:G86443PRIDE:Q9C6W6PRO:PR:Q9C6W6
ProteinModelPortal:Q9C6W6Proteomes:UP000006548RefSeq:NP_174477.1SMR:Q9C6W6SUPFAM:SSF48239SUPFAM:SSF48576TAIR:AT1G31950
UniGene:At.51866UniPathway:UPA00213UniProt:Q9C6W6
Coordinates (TAIR10) chr1:+:11475807..11478194
Molecular Weight (calculated) 70084.50 Da
IEP (calculated) 6.41
GRAVY (calculated) -0.23
Length 606 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAIRIGFGL PNVHSVPLCL TTTRCLFPRQ RLLHSHTPSW KPAKQQDFFV ASSSKKSSDD LESSLPTPHF SPSLWGDHFL SVSLNRAVEF DELEREIETT
101: KPLARDKLMS SESSDKEKIR LIHLLVSMGI SYHFDKEIQD ILKHSFTKLD DIIVGEDDLE TISIMFEVFK LYGHKMSCDA FDRFRGNDGR FKESLVRDFR
201: GMLQLFEVAH LGTPCEVIMD EALSFTRNHL ESLTSGNAST ASPHLLKHIQ NSLYIPRYCN IEVLVAREYI SYYEQEEGHD EILLKFAKLN FNFCQFHYVQ
301: ELKTLTKWWR DLDLASKLPY IRDRLVESHL VALGPYFEPH YSLGRIIVAK INMIMVVVDD TYDAYATLPQ VKALTECLQS IEVSDKLPDY LRIVLGSLFD
401: VMGEIEREMR PLGRLYRVKQ VVEKIKIITK AYQEIAKWAR TGHVSTFDEY MKVGVLTAGM ADYAAYCFIG MEDINEKEAF EWLNSNPLII KHLTAMFRLA
501: NDVGTYETEI NRGEVANGLN CYMKQYGVTK EEASRELRKM YVYRKKVVVE EFMNSHDHVP RQVLLRCLNI ARIFDVFYTE GDGYSEPKGK IEHFMTSLYL
601: HPIPLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)