suba logo
AT1G31930.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : extra-large GTP-binding protein 3
Curator
Summary (TAIR10)
Encodes XLG3 (extra-large G protein 3) that shows significant similarity to the G protein alpha subunit in its C terminal region. Involved in the regulation of root morphological and growth responses.
Computational
Description (TAIR10)
extra-large GTP-binding protein 3 (XLG3); FUNCTIONS IN: guanyl nucleotide binding, signal transducer activity; INVOLVED IN: in 11 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Guanine nucleotide binding protein (G-protein), alpha subunit (InterPro:IPR001019), G protein alpha subunit, helical insertion (InterPro:IPR011025); BEST Arabidopsis thaliana protein match is: extra-large G-protein 1 (TAIR:AT2G23460.1); Has 3436 Blast hits to 3429 proteins in 399 species: Archae - 0; Bacteria - 2; Metazoa - 2221; Fungi - 595; Plants - 371; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNVQeggNOG:KOG0082EMBL:AC074309EMBL:AC079041EMBL:AK229561EMBL:AK317243EMBL:AK317663
EMBL:CP002684EMBL:GQ229390EnsemblPlants:AT1G31930EnsemblPlants:AT1G31930.1EnsemblPlants:AT1G31930.2EnsemblPlants:AT1G31930.3entrez:840083
Gene3D:1.10.400.10Gene3D:3.40.50.300GeneID:840083Genevisible:Q9C516GO:GO:0003924GO:GO:0004871GO:GO:0005525
GO:GO:0005634GO:GO:0007186GO:GO:0009617GO:GO:0009723GO:GO:0046872GO:GO:2000280Gramene:AT1G31930.1
Gramene:AT1G31930.2Gramene:AT1G31930.3hmmpanther:PTHR10218hmmpanther:PTHR10218:SF192HOGENOM:HOG000241648InParanoid:Q9C516IntAct:Q9C516
InterPro:IPR001019InterPro:IPR011025InterPro:IPR027417KEGG:ath:AT1G31930ncoils:CoilOMA:VANVQCPPANTHER:PTHR10218
PaxDb:Q9C516Pfam:PF00503Pfam:Q9C516PhylomeDB:Q9C516PIR:E86443PRIDE:Q9C516PRINTS:PR00318
PRO:PR:Q9C516ProteinModelPortal:Q9C516Proteomes:UP000006548Reactome:R-ATH-399997Reactome:R-ATH-416476Reactome:R-ATH-416482Reactome:R-ATH-418555
Reactome:R-ATH-434316RefSeq:NP_001185125.1RefSeq:NP_174475.1RefSeq:NP_849737.1SMART:SM00275SMR:Q9C516STRING:3702.AT1G31930.1
SUPFAM:SSF47895SUPFAM:SSF52540TAIR:AT1G31930tair10-symbols:XLG3UniGene:At.17275UniProt:Q9C516
Coordinates (TAIR10) chr1:+:11465832..11468961
Molecular Weight (calculated) 96176.30 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.64
Length 848 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKKDEGESW KEMVRKMLPP GAPLPEDPSE FDYSIALEYT GPPPVHDIPR VSPVDVNPRV NNPIPLPVSR IAGGVTSSSG GSPASSESVV SVLHNNPESS
101: SGSASVSPVS GHRQNGNQVR RPVVKFKPVD DHDRIEGREA AEEEDNNVEA ETERERKVHE CTASTKRRKK KKKSECYRCG KAKWENKETC IVCDEKYCGN
201: CVLRAMGSMP EGRKCVSCIG QAIDESKRSK LGKHSRVLSR LLSPLEVKQI MKAEKECTAN QLRPEQLIVN GYPLKPEEMA DLLNCLLPPQ KLKPGRYWYD
301: KESGLWGKEG EKPDRVISSN LNFTGKLSPD ASNGNTEVYI NGREITKLEL RILKLANVQC PRDTHFWVYD DGRYEEEGQN NIRGNIWEKA STRFMCALFS
401: LPVPQGQPRG TVQPSSNYAT VPNYIEHKKI QKLLLLGIEG SGTSTIFKQA KFLYGNKFSV EELQDIKLMV QSNMYRYLSI LLDGRERFEE EALSHTRGLN
501: AVEGDSGGEE ANDEGTVTTP QSVYTLNPRL KHFSDWLLDI IATGDLDAFF PAATREYAPL VEEVWKDPAI QATYRRKDEL HFLPDVAEYF LSRAMEVSSN
601: EYEPSERDIV YAEGVTQGNG LAFMEFSLSD HSPMSESYPE NPDALSSPQP KYQLIRVNAK GMNDSCKWVE MFEDVRAVIF CISLSDYDQI NITPESSGTV
701: QYQNKMIQSK ELFESMVKHP CFKDTPFILI LNKYDQFEEK LNRAPLTSCD WFSDFCPVRT NNNVQSLAYQ AYFYVAMKFK LLYFSITGQK LFVWQARARD
801: RANVDEGFKY VREVLKWDEE KEESYLNGGG EDSFYSTDMS SSPYRPEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)