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AT1G31880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.936
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein
Curator
Summary (TAIR10)
Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. BRX encodes a key regulator of cell proliferation and elongation in the root, which has been implicated in the brassinosteroid (BR) pathway as well as regulation of auxin-responsive gene expression. Also involved in cytokinin-mediated inhibition of lateral root initiation. A loss-of-function allele, named brx-2 in Rodrigues et al. (2009) Plant Physiol. but changed to brx-3 to resolve nomenclature conflict (Li et al. Planta 2009:229(3):593-603), shows enhanced response to ABA-mediated inhibition of root growth.
Computational
Description (TAIR10)
BREVIS RADIX (BRX); CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: BREVIS RADIX-like 1 (TAIR:AT2G35600.1); Has 707 Blast hits to 407 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 705; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:25312eggNOG:ENOG410IEZReggNOG:ENOG410YFJPEMBL:AC079041EMBL:AY702648EMBL:AY702649EMBL:BT002854
EMBL:BT004390EMBL:CP002684EnsemblPlants:AT1G31880EnsemblPlants:AT1G31880.1entrez:840078GeneID:840078Genevisible:Q17TI5
GO:GO:0005634GO:GO:0005886GO:GO:0009734GO:GO:0009736GO:GO:0009737GO:GO:0048364GO:GO:0048527
Gramene:AT1G31880.1hmmpanther:PTHR22870hmmpanther:PTHR22870:SF190HOGENOM:HOG000240563InParanoid:Q17TI5IntAct:Q17TI5InterPro:IPR013591
InterPro:IPR027988KEGG:ath:AT1G31880OMA:SEMESEWPaxDb:Q17TI5Pfam:PF08381Pfam:PF13713Pfam:Q17TI5
Pfscan:PS51514PhylomeDB:Q17TI5PIR:A86443PRIDE:Q17TI5PRO:PR:Q17TI5PROSITE:PS51514Proteomes:UP000006548
RefSeq:NP_174471.2STRING:3702.AT1G31880.1TAIR:AT1G31880tair10-symbols:BRXtair10-symbols:NLM9UniGene:At.40252UniProt:Q17TI5
Coordinates (TAIR10) chr1:+:11447804..11450053
Molecular Weight (calculated) 38762.60 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.95
Length 344 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSCIACTKA DGGEEVEHGA RGGTTPNTKE AVKSLTIQIK DMALKFSGAY KQCKPCTGSS SSPLKKGHRS FPDYDNASEG VPYPFMGGSA GSTPAWDFTN
101: SSHHPAGRLE SKFTSIYGND RESISAQSCD VVLDDDGPKE WMAQVEPGVH ITFASLPTGG NDLKRIRFSR EMFDKWQAQR WWGENYDKIV ELYNVQRFNR
201: QALQTPARSD DQSQRDSTYS KMDSARESKD WTPRHNFRPP GSVPHHFYGG SSNYGPGSYH GGPPMDAART TTSSRDDPPS MSNASEMQAE WIEEDEPGVY
301: ITIRQLSDGT RELRRVRFSR ERFGEVHAKT WWEQNRERIQ TQYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)