AT1G31840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.950 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22470.1); Has 68904 Blast hits to 14697 proteins in 297 species: Archae - 6; Bacteria - 66; Metazoa - 698; Fungi - 1025; Plants - 65043; Viruses - 0; Other Eukaryotes - 2066 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:11424006..11426528 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 94171.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.72 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.19 | ||||||||||||||||||||||||||||||||||||||||
| Length | 840 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLFSSSSLQ LREIFFPRIF SVFVKLNFLN SRGFSSDSAK ALAAGISKAI KEGNFNLLDS SVYGSNLQRN ETNLVLLSLE SEPNSALKYF RWAEISGKDP 101: SFYTIAHVLI RNGMFDVADK VFDEMITNRG KDFNVLGSIR DRSLDADVCK FLMECCCRYG MVDKALEIFV YSTQLGVVIP QDSVYRMLNS LIGSDRVDLI 201: ADHFDKLCRG GIEPSGVSAH GFVLDALFCK GEVTKALDFH RLVMERGFRV GIVSCNKVLK GLSVDQIEVA SRLLSLVLDC GPAPNVVTFC TLINGFCKRG 301: EMDRAFDLFK VMEQRGIEPD LIAYSTLIDG YFKAGMLGMG HKLFSQALHK GVKLDVVVFS STIDVYVKSG DLATASVVYK RMLCQGISPN VVTYTILIKG 401: LCQDGRIYEA FGMYGQILKR GMEPSIVTYS SLIDGFCKCG NLRSGFALYE DMIKMGYPPD VVIYGVLVDG LSKQGLMLHA MRFSVKMLGQ SIRLNVVVFN 501: SLIDGWCRLN RFDEALKVFR LMGIYGIKPD VATFTTVMRV SIMEGRLEEA LFLFFRMFKM GLEPDALAYC TLIDAFCKHM KPTIGLQLFD LMQRNKISAD 601: IAVCNVVIHL LFKCHRIEDA SKFFNNLIEG KMEPDIVTYN TMICGYCSLR RLDEAERIFE LLKVTPFGPN TVTLTILIHV LCKNNDMDGA IRMFSIMAEK 701: GSKPNAVTYG CLMDWFSKSV DIEGSFKLFE EMQEKGISPS IVSYSIIIDG LCKRGRVDEA TNIFHQAIDA KLLPDVVAYA ILIRGYCKVG RLVEAALLYE 801: HMLRNGVKPD DLLQRALSEY NPPKWLMSKG VWVHDKPMPD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)