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AT1G31820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.902
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Amino acid permease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Amino acid permease family protein; FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: Amino acid permease family protein (TAIR:AT1G31830.1); Has 24659 Blast hits to 24648 proteins in 2148 species: Archae - 328; Bacteria - 21417; Metazoa - 747; Fungi - 1081; Plants - 444; Viruses - 0; Other Eukaryotes - 642 (source: NCBI BLink).
Protein Annotations
BioGrid:25306eggNOG:COG0531eggNOG:KOG1287EMBL:AC079041EMBL:CP002684EnsemblPlants:AT1G31820EnsemblPlants:AT1G31820.1
entrez:840072GeneID:840072Genevisible:Q9C6S4GO:GO:0005886GO:GO:0015171GO:GO:0015203GO:GO:0015293
GO:GO:0015297GO:GO:0015846GO:GO:0016021GO:GO:1902047Gramene:AT1G31820.1hmmpanther:PTHR11785hmmpanther:PTHR11785:SF355
HOGENOM:HOG000239391InParanoid:Q9C6S4InterPro:IPR002293KEGG:ath:AT1G31820OMA:WCIPEALPANTHER:PTHR11785PaxDb:Q9C6S4
Pfam:PF13520Pfam:Q9C6S4PhylomeDB:Q9C6S4PIR:C86442PIRSF:PIRSF006060PRIDE:Q9C6S4PRO:PR:Q9C6S4
ProteinModelPortal:Q9C6S4Proteomes:UP000006548RefSeq:NP_174465.1SMR:Q9C6S4STRING:3702.AT1G31820.1TAIR:AT1G31820TMHMM:TMhelix
UniGene:At.40262UniProt:Q9C6S4
Coordinates (TAIR10) chr1:-:11416691..11418139
Molecular Weight (calculated) 52602.10 Da
IEP (calculated) 4.64
GRAVY (calculated) 0.65
Length 482 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDYNMNEFA YGNLYDDDDG DVGGSSKEGN NSIQKVSMLP LVFLIFYEVS GGPFGAEGSV NAAGPLLALL GFVIFPFIWC IPEALITAEM STMFPINGGF
101: VVWVSSALGT FWGFQVGWMK WLCGVIDNAL YPVLFLDYLK SAVPALATGL PRVASILILT LLLTYLNYRG LTIVGWTAVF MGVFSMLPFA VMSLVSIPQL
201: EPSRWLVMDL GNVNWNLYLN TLLWNLNYWD SVSTLAGEVA NPKKTLPKAL CYGVIFVALS NFLPLLSGTG AIPLDRELWT DGYLAEVAKA IGGGWLQLWV
301: QAAAATSNMG MFLAEMSSDS FQLLGMAELG ILPEIFAQRS RYGTPLLGIL FSASGVLLLS GLSFQEIIAA ENLLYCGGMI LEFIAFVRLR KKHPAASRPY
401: KIPVGTVGSI LICVPPIVLI CLVIVLSTIK VALVSFVMVV IGFLMKPCLN HMDGKKWVKF SVCSDLAEFQ KENLDCEESL LR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)