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AT1G31817.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal L18p/L5e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NUCLEAR FUSION DEFECTIVE 3 (NFD3); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S11 (InterPro:IPR001971); BEST Arabidopsis thaliana protein match is: ribosomal protein S11 (TAIR:ATCG00750.1); Has 7495 Blast hits to 7495 proteins in 2576 species: Archae - 12; Bacteria - 4865; Metazoa - 67; Fungi - 4; Plants - 661; Viruses - 0; Other Eukaryotes - 1886 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0100eggNOG:ENOG410IY8REMBL:AC079041EMBL:AY063845
EMBL:AY117289EMBL:CP002684EnsemblPlants:AT1G31817EnsemblPlants:AT1G31817.1
entrez:840071Gene3D:3.30.420.80GeneID:840071Genevisible:Q8VZT8
GO:GO:0000028GO:GO:0000462GO:GO:0000741GO:GO:0003735
GO:GO:0005763GO:GO:0006412GO:GO:0010197GO:GO:0048027
GO:GO:0070181Gramene:AT1G31817.1HAMAP:MF_01310hmmpanther:PTHR11759
hmmpanther:PTHR11759:SF8HOGENOM:HOG000150657IntAct:Q8VZT8InterPro:IPR001971
KEGG:ath:AT1G31817OMA:MNGVSRHPANTHER:PTHR11759PaxDb:Q8VZT8
Pfam:PF00411Pfam:Q8VZT8PhylomeDB:Q8VZT8PIR:B86442
PRIDE:Q8VZT8PRO:PR:Q8VZT8ProteinModelPortal:Q8VZT8Proteomes:UP000006548
RefSeq:NP_564385.1SMR:Q8VZT8STRING:3702.AT1G31817.1SUPFAM:SSF53137
TAIR:AT1G31817tair10-symbols:NFD3UniGene:At.24108UniProt:Q8VZT8
Coordinates (TAIR10) chr1:-:11414932..11416356
Molecular Weight (calculated) 33928.00 Da
IEP (calculated) 11.15
GRAVY (calculated) -0.62
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGVSRHLRA SSLLSLIRSY GGINSVCRFS SQSDGFSGGR FREQVPVSGE SANNSGLSNT GRIGSSPEPN PSTLRTFGDM KAGLLNRGVN GFSAPNAPPT
101: FKSSLRSRLP NSLPDQFGQT NPGLPNTGGS GFSAPSLSSY ENFTQSSSLL KENSRSGGKS SDLDFVREVI EDEGRRTAGI FSHFQRPNLE TNADIIHIKM
201: LRNNTFVTVT DSKGNVKCKA TSGSLPDLKG GRKMTNYTAD ATAENIGRRA KAMGLKSVVV KVNGFTHFGK KKKAIIAFRD GFTNSRSDQN PIVYIEDTTR
301: KAHNGCRLPR KRRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)