suba logo
AT1G31750.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.875
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : proline-rich family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
proline-rich family protein; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT2G04063.1); Has 30775 Blast hits to 15451 proteins in 908 species: Archae - 8; Bacteria - 4096; Metazoa - 13079; Fungi - 3329; Plants - 5909; Viruses - 858; Other Eukaryotes - 3496 (source: NCBI BLink).
Protein Annotations
EMBL:AC074360EMBL:AC079041EMBL:AK228856EMBL:BT025740
EMBL:CP002684EnsemblPlants:AT1G31750EnsemblPlants:AT1G31750.1entrez:840062
GeneID:840062Gramene:AT1G31750.1IntAct:Q9C4Z8KEGG:ath:AT1G31750
OMA:KRGKHGMPIR:A86441Proteomes:UP000006548RefSeq:NP_564381.1
STRING:3702.AT1G31750.1TAIR:AT1G31750UniGene:At.40280UniGene:At.74118
UniProt:Q9C4Z8
Coordinates (TAIR10) chr1:-:11370809..11372031
Molecular Weight (calculated) 18395.80 Da
IEP (calculated) 10.84
GRAVY (calculated) -1.11
Length 176 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKDDHHEQD KRFFSHHNHH GHGYPPGAYP PPPQGAYPPP GGYPPQGYPP PPHGYPPAAY PPPPGAYPPA GYPGPSGPRP GFGGGVGGLI AGAATAAAAA
101: MGGHHAGHHG GYGHHGHGKY KRGFFGGGKY KRGKHSMFGG GKYKRGKHGM FGGKRSKHGM FGGKRGKGMF GRKKWK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)