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AT1G31640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AGAMOUS-like 92
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 92 (AGL92); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 86 (TAIR:AT1G31630.1); Has 2313 Blast hits to 2290 proteins in 309 species: Archae - 0; Bacteria - 3; Metazoa - 438; Fungi - 19; Plants - 1702; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Protein Annotations
BioGrid:25286eggNOG:COG5068eggNOG:KOG0014EMBL:AC074360EMBL:CP002684EnsemblPlants:AT1G31640EnsemblPlants:AT1G31640.1
entrez:840051GeneID:840051Genevisible:Q9C6V4GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
Gramene:AT1G31640.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF153HOGENOM:HOG000006067InParanoid:Q9C6V4IntAct:Q9C6V4InterPro:IPR002100
KEGG:ath:AT1G31640ncoils:CoilOMA:YEPVQPYPaxDb:Q9C6V4Pfam:PF00319Pfam:Q9C6V4Pfscan:PS50066
PhylomeDB:Q9C6V4PRINTS:PR00404PRO:PR:Q9C6V4PROSITE:PS50066ProteinModelPortal:Q9C6V4Proteomes:UP000006548RefSeq:NP_174445.1
SMART:SM00432STRING:3702.AT1G31640.1SUPFAM:SSF55455TAIR:AT1G31640tair10-symbols:AGL92UniGene:At.51860UniProt:Q9C6V4
Coordinates (TAIR10) chr1:-:11322692..11324176
Molecular Weight (calculated) 52214.40 Da
IEP (calculated) 6.19
GRAVY (calculated) -0.57
Length 464 amino acids
Sequence (TAIR10)
(BLAST)
001: MRTKTKLVLI PDRHFRRATF RKRNAGIRKK LHELTTLCDI KACAVIYSPF ENPTVWPSTE GVQEVISEFM EKPATERSKT MMSHETFLRD QITKEQNKLE
101: SLRRENRETQ LKHFMFDCVG GKMSEQQYGA RDLQDLSLFT DQYLNQLNAR KKFLTEYGES SSSVPPLFDV AGANPPVVAD QAAVTVPPLF AVAGANLPVV
201: ADQAAVTVPP LFAVAGANLP VVADQAAVNV PTGFHNMNVN QNQYEPVQPY VPTGFSDHIQ YQNMNFNQNQ QEPVHYQALA VAGAGLPMTQ NQYEPVHYQS
301: LAVAGGGLPM SQLQYEPVQP YIPTVFSDNV QYQHMNLYQN QQEPVHYQAL GVAGAGLPMN QNQYEPVQPY VPTGFSDHFQ FENMNLNQNQ QEPVQYQAPV
401: DFNHQIQQGN YDMNLNQNMK HAHIPFMDGN YYNYHQPPTV GLTSTGHMPS TTTTTTNNNN NNNV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)