AT1G31480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : shoot gravitropism 2 (SGR2) | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a novel protein that may be part of a gene family represented by bovine phosphatidic acid-preferring phospholipase A1 (PA-PLA1)containing a putative transmembrane domain. SGR2 is involved in the formation and function of the vacuole. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SHOOT GRAVITROPISM 2 (SGR2); FUNCTIONS IN: phospholipase A1 activity; INVOLVED IN: gravitropism, negative gravitropism, detection of gravity, amyloplast organization; LOCATED IN: plant-type vacuole membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDHD (InterPro:IPR004177); Has 1169 Blast hits to 760 proteins in 179 species: Archae - 0; Bacteria - 1; Metazoa - 647; Fungi - 353; Plants - 53; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:11266225..11271527 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 106321.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.40 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 933 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDRETHLGT REVNETSPDL LKNTPSNIAR LEDVIEQCHG RQKYLAQTRS PSDGSDVRWY FCKVPLAENE LAASVPRTDV VGKSEYFRFG MRDSLAIEAS 101: FLQREDELLS LWWKEYAECS EGPKLQVNSK KKSIETPSEA SVSSSLYEVE EERVGVPVKG GLYEVDLVRR HCFPVYWNGD NRRVLRGHWF ARKGGLDWLP 201: IPETVSEQLE VAYRNKVWRR RSFQPSGLFA ARIDLQGSSL GLHALFTGED DTWEAWLNVD PSGFSGIVGY TGNGIKLRRG YAGSYSPKPT QEELRQQKEE 301: EMDDYCSQVP VRHLVFMVHG IGQKGEKSNL VDDVGNFRQI TAALAERHLT SHQLSTQRVL FIPCQWRKGL KLSGEAAVDK CTLDGVRRFR EMLSATVHDV 401: LYYMSPIYCQ AIIDSVSKQL NRLYLKFLKR NPDYVGKISI YGHSLGSVLS YDILCHQHNL SSPFPMDSVY KKFFPDEESP PTPAKADKPC SSHPSSNFEP 501: EKSDQLNNPE KITGQDNNTM AKEPTVLEHH DVIQEDPSLI SDSVVANVGL ERRGGQEDDH HDSSGAISSQ DVPDGADCRT PDSPSCSQEQ SWDKESVNSN 601: NEERIKLLQD EVNSLRSKVA QLLSENARIL SDEKAKTSVA PKELNNEKVQ TEDADAPTSF TPFIKYQKLE FKVDTFFAVG SPLGVFLALR NIRLGIGKGK 701: DYWEEENAIE EMPACRRMFN IFHPYDPVAY RVEPLVCKEY LPERPVIIPY HRGGKRLHIG LQDFREDFAA RSQRIMNHFD SVRTRVLTIC QSKSADNLDE 801: MEETDDEKDD RSYGSLMIER LTGTRDGRID HMLQEKTFEH PYLQAIGAHT NYWRDQDTAL FIIKHLYREL PDGPNSPTES TEGDDSPKDS SRPHSWIDRR 901: EADYDDEELP LTFSDKQITR SFSAEAKKYL KKP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)