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AT1G31460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23270.1); Has 1251 Blast hits to 756 proteins in 185 species: Archae - 0; Bacteria - 295; Metazoa - 374; Fungi - 176; Plants - 58; Viruses - 17; Other Eukaryotes - 331 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3X1eggNOG:ENOG410ZBR7EMBL:AC027135EMBL:AK117812EMBL:BT005293EMBL:CP002684EnsemblPlants:AT1G31460
EnsemblPlants:AT1G31460.1entrez:840036GeneID:840036GO:GO:0005886Gramene:AT1G31460.1hmmpanther:PTHR35692hmmpanther:PTHR35692:SF1
HOGENOM:HOG000152201IntAct:Q9C863KEGG:ath:AT1G31460ncoils:CoilOMA:PAAPRHEPhylomeDB:Q9C863PIR:F86440
Proteomes:UP000006548RefSeq:NP_564380.1STRING:3702.AT1G31460.1TAIR:AT1G31460UniGene:At.17561UniGene:At.48252UniGene:At.67236
UniProt:Q9C863
Coordinates (TAIR10) chr1:-:11261705..11262610
Molecular Weight (calculated) 33312.80 Da
IEP (calculated) 10.23
GRAVY (calculated) -0.94
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MADFGYFSDT DDSAVEELIS QAKELSDLEQ VAAINCSGFT DSTLPDDLES RFRRLKSLPA APRHEPVSSS SSMNRQKPLS HSKSVNVNFS GNRRNPGKKT
101: GSVSLSDEDS SNLSRKKRDL DLKSSSQAEL VSNGSGDFSD SGNISESKIL SPVKQQTKKK LPKEKRRIVS PSSSSSIDLA TPPSTDSEPE KKSKPKSKSS
201: WFDKLSPSKL IGSIWRSSPK KSTTNKKNLK NCKSFGAATY SSGRERNVDF DEFLSDLNAF PVEDQRKMLK KALKEQQKMR KEAAEIIKMA KHASARFDFD
301: D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)