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AT1G31340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.605
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21166475 (2011): cytosol
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : related to ubiquitin 1
Curator
Summary (TAIR10)
Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response.
Computational
Description (TAIR10)
related to ubiquitin 1 (RUB1); INVOLVED IN: protein modification process, response to auxin stimulus, protein neddylation, ethylene biosynthetic process, embryo development; LOCATED IN: plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 7 (TAIR:AT2G35635.1); Has 16064 Blast hits to 7349 proteins in 721 species: Archae - 0; Bacteria - 36; Metazoa - 7330; Fungi - 1879; Plants - 3570; Viruses - 331; Other Eukaryotes - 2918 (source: NCBI BLink).
Protein Annotations
BioGrid:25258eggNOG:COG5272eggNOG:KOG0001EMBL:AC007654EMBL:AK228591EMBL:BT005749EMBL:BT006110
EMBL:CP002684EnsemblPlants:AT1G31340EnsemblPlants:AT1G31340.1entrez:840023EvolutionaryTrace:Q9SHE7GeneID:840023Genevisible:Q9SHE7
GO:GO:0005634GO:GO:0005829GO:GO:0005886GO:GO:0009693GO:GO:0009733GO:GO:0045116Gramene:AT1G31340.1
hmmpanther:PTHR10666InParanoid:Q9SHE7InterPro:IPR000626InterPro:IPR019954InterPro:IPR019956InterPro:IPR029071iPTMnet:Q9SHE7
KEGG:ath:AT1G31340KO:K12158OMA:INIEPNDPaxDb:Q9SHE7PDB:1BT0PDBsum:1BT0Pfam:PF00240
Pfam:Q9SHE7Pfscan:PS50053PhylomeDB:Q9SHE7PIR:C86439PRIDE:Q9SHE7PRINTS:PR00348PRO:PR:Q9SHE7
PROSITE:PS00299PROSITE:PS50053ProteinModelPortal:Q9SHE7Proteomes:UP000006548Reactome:R-ATH-110312Reactome:R-ATH-110314Reactome:R-ATH-110320
Reactome:R-ATH-156827Reactome:R-ATH-174184Reactome:R-ATH-179409Reactome:R-ATH-1799339Reactome:R-ATH-349425Reactome:R-ATH-450302Reactome:R-ATH-450321
Reactome:R-ATH-5358346Reactome:R-ATH-5632684Reactome:R-ATH-5655862Reactome:R-ATH-5656121Reactome:R-ATH-5656169Reactome:R-ATH-5696394Reactome:R-ATH-5696395
Reactome:R-ATH-5696397Reactome:R-ATH-5696400Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-68949Reactome:R-ATH-69017
Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-917729Reactome:R-ATH-975956Reactome:R-ATH-975957
Reactome:R-ATH-983168RefSeq:NP_564379.2scanprosite:PS00299SMART:SM00213SMR:Q9SHE7STRING:3702.AT1G31340.1SUPFAM:SSF54236
TAIR:AT1G31340tair10-symbols:ATRUB1tair10-symbols:NEDD8tair10-symbols:RUB1UniGene:At.25337UniGene:At.30783UniGene:At.43046
UniProt:Q9SHE7
Coordinates (TAIR10) chr1:-:11218076..11219417
Molecular Weight (calculated) 17398.10 Da
IEP (calculated) 5.85
GRAVY (calculated) -0.37
Length 156 amino acids
Sequence (TAIR10)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGFGLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)