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AT1G31310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G35640.1); Has 3054 Blast hits to 2678 proteins in 309 species: Archae - 8; Bacteria - 384; Metazoa - 1064; Fungi - 253; Plants - 884; Viruses - 120; Other Eukaryotes - 341 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW3AeggNOG:ENOG410YGIREMBL:CP002684EnsemblPlants:AT1G31310EnsemblPlants:AT1G31310.1entrez:840019GeneID:840019
GO:GO:0003700GO:GO:0006355Gramene:AT1G31310.1hmmpanther:PTHR33492hmmpanther:PTHR33492:SF2InParanoid:F4I9C1InterPro:IPR017877
KEGG:ath:AT1G31310OMA:ESNVEMNPaxDb:F4I9C1Pfam:PF13837Pfscan:PS50090PRIDE:F4I9C1PROSITE:PS50090
ProteinModelPortal:F4I9C1Proteomes:UP000006548RefSeq:NP_174416.2SMR:F4I9C1STRING:3702.AT1G31310.1TAIR:AT1G31310UniGene:At.40372
UniGene:At.70648UniProt:F4I9C1
Coordinates (TAIR10) chr1:-:11198565..11200025
Molecular Weight (calculated) 42591.40 Da
IEP (calculated) 9.50
GRAVY (calculated) -0.76
Length 383 amino acids
Sequence (TAIR10)
(BLAST)
001: MADQSGGLVM MREYRKGNWT LNETMVLIEA KRMDDERRMR RSIGLPPPEQ QQDIRSNKPA ELRWKWIEDY CWRKGCMRSQ NQCNDKWDNL MRDYKKVREY
101: ERRRVESSIT AGESSSSSAP AGETASYWKM EKSERKERSL PSNMLPQTYQ ALFEVVESKT LPSSTAVTAV TAAVAAAAAA ISSGNGSGGG QIQKVIQQGL
201: GFVVPKVHQI IQQQPVLLPL QPPPPPPPSQ PLPRPLLLPP PPPPSFHAQP ILPTKDSSTD SDTSEYSDTS PAKRRRTMPT TTTAGPSGGG VDVEEVGRSK
301: RDEETTVAAA LSRSVSVIAN AIRESEERQD RRHKEVMNVQ ERRLKIEESN VEMNREGMNG LVEAINKLAS SIFALASSSR HNN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)