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AT1G31240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Bromodomain transcription factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bromodomain transcription factor; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Bromodomain transcription factor (InterPro:IPR006565); BEST Arabidopsis thaliana protein match is: Bromodomain transcription factor (TAIR:AT3G02160.1); Has 151 Blast hits to 151 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 64; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
DNASU:840012eggNOG:ENOG410ZS4DeggNOG:KOG2389EMBL:AC004793EMBL:AK229436EMBL:BT010198EMBL:CP002684
EnsemblPlants:AT1G31240EnsemblPlants:AT1G31240.1entrez:840012GeneID:840012Gramene:AT1G31240.1hmmpanther:PTHR12321hmmpanther:PTHR12321:SF38
IntAct:Q9SA19InterPro:IPR006565InterPro:IPR009072KEGG:ath:AT1G31240KO:K14649OMA:LWENSDSPfam:PF07524
Proteomes:UP000006548RefSeq:NP_174409.1SMART:SM00576STRING:3702.AT1G31240.1SUPFAM:SSF47113TAIR:AT1G31240UniGene:At.40389
UniProt:Q9SA19
Coordinates (TAIR10) chr1:-:11164065..11164898
Molecular Weight (calculated) 30963.20 Da
IEP (calculated) 7.79
GRAVY (calculated) -0.60
Length 277 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRRRRNSKL KFEETSDQSP TSTAEFSFSL TKIAVSQICQ SIGYKATDAS ALNTLTLTTT KFLQSLAELA SSFSNTANRT EVNLFDIVNG LQDIALSTSD
101: CFPGGSTVHD IESQCLIKSA VLRNLSDFVT YAPEIPFAKP LPRRERDGSF GGDLDHVAVT RSVDVTSVPA WLPPFPDSSL CSDRCSKDNR SDHLWENSDS
201: VIRREILPES LKSKSGGRLP VMRDKVRFKM EQRDWSSGGD TRLERSRDNN NGESGRDLEV KKKIREGYTY CAGEWPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)