AT1G31150.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Domain of unknown function (DUF1985) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1985 (InterPro:IPR015410), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1985) (TAIR:AT1G36970.1); Has 361 Blast hits to 354 proteins in 51 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 6; Plants - 334; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:11120097..11122412 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76899.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.34 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||||||||||
| Length | 673 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNQIKDPNPN LPERLFAVDC YPDKARLNIY SRPEYLGTIA NLLKGSEEWE RIKSSQFGKL FEFPVARCSH SGKLIHGLLS RQVVTKKKHE LWFVFGGHPI 101: RFSIREFHIV TGLRCGKLPT EDEVKKHQDS KYLSVWNRLF GEKRMVTIGD VLEMLQKKKL SSWKKLCLAL IVIVDGVVVC NDQSFVTLDF VEMLNDIDFF 201: LEYPWGRKAF LATIRRFGPP KDAPNPLGKL KKRLKQKTSA CYGFPLALQL QVFESIPVIL ERIKDPNDLR DFTERSSEGL SIAFLLRKSY ILDAEVDDKL 301: VVAHTLEPKG MINESELVWE TEVSDPKVDY ILRLINEGHC FKPFEWPHLK AANQEVNIPD IDGDSLEDVT DVSQARPKKP LTRSSKKEKE VVKPPSIHKH 401: TSQEKIKAKV HVGGESNDPG YVTLAYLNDM KEWILKQNQD LRNKIREDVK EIVVGPKSPA GGASNLRQSN RLNTNSKGKT DASPPKKTGN TETRKRKRKQ 501: VEVHSLSSGS ESAGDIEGEE DVQSTWKEDG NAPSSGTFDE CDDYGGALKI TQEGDVMQEE SDFDHCSSNC TKMKESMMRE IENLELKLQL YGGHGLNNLT 601: YDELLHFEHQ LESSLHIARA HKQEQQQQQT DKLKENLMVC QRHEDDDIMH RQVKKENPPA FFSSSRRHNQ PQD |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)