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AT1G31050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G61660.3); Has 358 Blast hits to 358 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:25226eggNOG:ENOG410IWHDeggNOG:ENOG410Y9A0EMBL:AC000107EMBL:BT011591EMBL:BT012233EMBL:CP002684
EnsemblPlants:AT1G31050EnsemblPlants:AT1G31050.1entrez:839991ExpressionAtlas:Q6NLU6GeneID:839991Genevisible:Q6NLU6Gramene:AT1G31050.1
hmmpanther:PTHR16223hmmpanther:PTHR16223:SF32InParanoid:Q6NLU6KEGG:ath:AT1G31050PaxDb:Q6NLU6Pfam:Q6NLU6Pfam:Q9FYJ6
Pfscan:PS50888PRO:PR:Q6NLU6PROSITE:PS50888ProteinModelPortal:Q9FYJ6Proteomes:UP000006548RefSeq:NP_174391.5SMR:Q9FYJ6
STRING:3702.AT1G31050.1TAIR:AT1G31060UniGene:At.20643UniProt:Q6NLU6UniProt:Q9FYJ6
Coordinates (TAIR10) chr1:-:11075720..11079140
Molecular Weight (calculated) 48981.30 Da
IEP (calculated) 6.87
GRAVY (calculated) -0.89
Length 434 amino acids
Sequence (TAIR10)
(BLAST)
001: MLREECTPSS SWWEDVQHHH NDHANSISST SFYHKSSNNN SHANASCEED NLSVSTVRAS NRLDLTAESS NHHSLSASNQ PASSSDELLR DHVVSSHNHL
101: WSLAFLPGRS LGDQMMDHHH HIASRNSSTT SELPSFEPAC HNGNGNGWIY DPNQVRYDQS SDQRLSKLTD LVGKHWSIAP PNNPDMNHNL HHHFDHDHSQ
201: NDDISMYRQA LEVKNEEDLC YNNGSSGGGS LFHDPIESSR SFLDIRLSRP LTDINPSFKP CFKALNVSEF NKKEHQTASL AAVRLGTTNA GKKKRCEEIS
301: DEVSKKAKCS EGSTLSPEKE LPKAKLRDKI TTLQQIVSPF GKTDTASVLQ EAITYINFYQ EQVKLLSTPY MKNSSMKDPW GGWDREDHNK RGPKHLDLRS
401: RGLCLVPISY TPIAYRDNSA TDYWNPTYRG SLYR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)