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AT1G30970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : zinc finger (C2H2 type) family protein
Curator
Summary (TAIR10)
Encodes SUF4 (SUPPRESSOR of FRI 4), a putative zinc-finger-containing transcription factor that is required for delayed flowering in winter-annual Arabidopsis. suf4 mutations strongly suppress the late-flowering phenotype of FRI (FRIGIDA) mutants. suf4 mutants also show reduced H3K4 trimethylation at FLC (FLOWERING LOCUS C), a floral inhibitor. SUF4 may act to specifically recruit a putative histone H3 methyltransferase EFS (EARLY FLOWERING IN SHORT DAYS) and the PAF1-like complex to the FLC locus.
Computational
Description (TAIR10)
suppressor of FRIGIDA4 (SUF4); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, BED-type predicted (InterPro:IPR003656), Zinc finger, C2H2-type (InterPro:IPR007087); Has 21249 Blast hits to 14717 proteins in 989 species: Archae - 33; Bacteria - 3114; Metazoa - 8587; Fungi - 3278; Plants - 3255; Viruses - 686; Other Eukaryotes - 2296 (source: NCBI BLink).
Protein Annotations
BioGrid:25219eggNOG:ENOG410ZJGQeggNOG:KOG2893EMBL:AC000107
EMBL:AF360277EMBL:AK221417EMBL:AY039540EMBL:AY051039
EMBL:AY085612EMBL:CP002684EnsemblPlants:AT1G30970EnsemblPlants:AT1G30970.1
EnsemblPlants:AT1G30970.2entrez:839984ExpressionAtlas:Q9C5G0GeneID:839984
Genevisible:Q9C5G0GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006355GO:GO:0009908GO:GO:0009910GO:GO:0030154
GO:GO:0046872hmmpanther:PTHR23215HOGENOM:HOG000211933InParanoid:Q9C5G0
IntAct:Q9C5G0InterPro:IPR003656InterPro:IPR007087InterPro:IPR015880
KEGG:ath:AT1G30970MINT:MINT-8049951OMA:PPPQPWFPaxDb:Q9C5G0
Pfam:Q9C5G0Pfscan:PS50808PhylomeDB:Q9C5G0PRIDE:Q9C5G0
PRO:PR:Q9C5G0PROSITE:PS50808ProteinModelPortal:Q9C5G0Proteomes:UP000006548
RefSeq:NP_001077634.1RefSeq:NP_564369.1scanprosite:PS00028SMART:SM00355
SMR:Q9C5G0STRING:3702.AT1G30970.1SUPFAM:SSF57667TAIR:AT1G30970
tair10-symbols:SUF4UniGene:At.25254UniProt:Q9C5G0
Coordinates (TAIR10) chr1:-:11040613..11043593
Molecular Weight (calculated) 39803.60 Da
IEP (calculated) 8.78
GRAVY (calculated) -0.54
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKKKKRATE KVWCYYCDRE FDDEKILVQH QKAKHFKCHV CHKKLSTASG MVIHVLQVHK ENVTKVPNAK DGRDSTDIEI YGMQGIPPHV LTAHYGEEED
101: EPPAKVAKVE IPSAPLGGVV PRPYGMVYPP QQVPGAVPAR PMYYPGPPMR HPAPVWQMPP PRPQQWYPQN PALSVPPAAH LGYRPQPLFP VQNMGMTPTP
201: TSAPAIQPSP VTGVTPPGIP TSSPAMPVPQ PLFPVVNNSI PSQAPPFSAP LPVGGAQQPS HADALGSADA YPPNNSIPGG TNAHSYASGP NTSGPSIGPP
301: PVIANKAPSN QPNEVYLVWD DEAMSMEERR MSLPKYKVHD ETSQMNSINA AIDRRISESR LAGRMAF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)