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AT1G30960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.745
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GTP-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GTP-binding family protein; FUNCTIONS IN: RNA binding, GTP binding; LOCATED IN: cytosol; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, prokaryotic type (InterPro:IPR009019), K Homology, type 2 (InterPro:IPR004044), Small GTP-binding protein (InterPro:IPR005225), GTP-binding protein Era (InterPro:IPR005662), GTP-binding protein, HSR1-related (InterPro:IPR002917), K homology-like, alpha/beta (InterPro:IPR015946); BEST Arabidopsis thaliana protein match is: RNA binding;GTP binding (TAIR:AT5G66470.1); Has 21534 Blast hits to 19384 proteins in 2851 species: Archae - 72; Bacteria - 16256; Metazoa - 383; Fungi - 140; Plants - 214; Viruses - 0; Other Eukaryotes - 4469 (source: NCBI BLink).
Protein Annotations
BioGrid:25218eggNOG:COG1159eggNOG:KOG1423EMBL:AC000107EMBL:BT015076EMBL:BT015910EMBL:CP002684
EMBL:Y17969EnsemblPlants:AT1G30960EnsemblPlants:AT1G30960.1entrez:839983Gene3D:3.30.300.20Gene3D:3.40.50.300GeneID:839983
Genevisible:O82653GO:GO:0003723GO:GO:0005525GO:GO:0005829Gramene:AT1G30960.1HAMAP:MF_00367hmmpanther:PTHR11649
hmmpanther:PTHR11649:SF57HOGENOM:HOG000245597InParanoid:O82653InterPro:IPR004044InterPro:IPR005225InterPro:IPR005662InterPro:IPR006073
InterPro:IPR009019InterPro:IPR015946InterPro:IPR027417InterPro:IPR030388iPTMnet:O82653KEGG:ath:AT1G30960OMA:PAVSMHR
PaxDb:O82653Pfam:O82653Pfam:PF01926Pfam:PF07650Pfscan:PS50823Pfscan:PS51713PhylomeDB:O82653
PIR:C86435PRIDE:O82653PRO:PR:O82653PROSITE:PS50823PROSITE:PS51713ProteinModelPortal:O82653Proteomes:UP000006548
RefSeq:NP_174383.1SMR:O82653STRING:3702.AT1G30960.1SUPFAM:SSF52540SUPFAM:SSF54814TAIR:AT1G30960TIGRfam:TIGR00231
TIGRfam:TIGR00436TIGRFAMs:TIGR00231TIGRFAMs:TIGR00436UniGene:At.49929UniProt:O82653
Coordinates (TAIR10) chr1:-:11037755..11039977
Molecular Weight (calculated) 49673.50 Da
IEP (calculated) 7.68
GRAVY (calculated) -0.56
Length 437 amino acids
Sequence (TAIR10)
(BLAST)
001: MKAFRSLRIL ISISRTTTKT TPRNPHQAQN FLRRFYSAQP NLDEPTSINE DGSSSDSVFD SSQYPIDDSN VDSVKKPKEA TWDKGYRERV NKAFFGNLTE
101: KGKVKVAEEE SSEDDEDSVD RSRILAKALL EAALESPDEE LGEGEVREED QKSLNVGIIG PPNAGKSSLT NFMVGTKVAA ASRKTNTTTH EVLGVLTKGD
201: TQVCFFDTPG LMLKKSGYGY KDIKARVQNA WTSVDLFDVL IVMFDVHRHL MSPDSRVVRL IKYMGEEENP KQKRVLCMNK VDLVEKKKDL LKVAEEFQDL
301: PAYERYFMIS GLKGSGVKDL SQYLMDQAVK KPWEEDAFTM SEEVLKNISL EVVRERLLDH VHQEIPYGLE HRLVDWKELR DGSLRIEQHL ITPKLSQRKI
401: LVGKGGCKIG RIGIEANEEL RRIMNRKVHL ILQVKLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)