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AT1G30850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : root hair specific 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
root hair specific 4 (RSH4); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34910.1); Has 45 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JH07eggNOG:ENOG41115ZVEMBL:AC004135EMBL:AY773820
EMBL:CP002684EnsemblPlants:AT1G30850EnsemblPlants:AT1G30850.1entrez:839969
GeneID:839969Gramene:AT1G30850.1hmmpanther:PTHR33672hmmpanther:PTHR33672:SF4
KEGG:ath:AT1G30850OMA:GRDVQEPPhylomeDB:Q9SY31Proteomes:UP000006548
RefSeq:NP_174370.1STRING:3702.AT1G30850.1TAIR:AT1G30850tair10-symbols:RSH4
UniGene:At.50787UniGene:At.68819UniProt:Q9SY31
Coordinates (TAIR10) chr1:+:10985116..10986018
Molecular Weight (calculated) 33688.20 Da
IEP (calculated) 10.81
GRAVY (calculated) -0.59
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MPPPAMLAFD DGLARKSNDN EWQGFRVFPG ENTNPNPNIN FLVKKAILQN EKSITPLFSR SSARDDSFRI VLPPALPPPR DSTVPLPMLP EPMRVRKKLS
101: HQESVIFMSK SRFAEKILYK EEDFKCNAFC LSLPGFGKNK LIRSSSKRQN SMEKKMIRAS SFTGSTVSVR ASLEKFECGS WASTTALIQD NGRLFFDFPV
201: EMTKCNSRGG NGGRDVQEPV TSGFLFDRET ETLALRSVLK TRSTRDHRRS AESSPQRRVR FSTSSSSASV SCPTSPRTCI TPRLRKARDD FNTFLTAQNA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)