AT1G30850.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.994 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : root hair specific 4 | ||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
root hair specific 4 (RSH4); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34910.1); Has 45 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:10985116..10986018 | ||||||||||||||||||||||||
Molecular Weight (calculated) | 33688.20 Da | ||||||||||||||||||||||||
IEP (calculated) | 10.81 | ||||||||||||||||||||||||
GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||
Length | 300 amino acids | ||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MPPPAMLAFD DGLARKSNDN EWQGFRVFPG ENTNPNPNIN FLVKKAILQN EKSITPLFSR SSARDDSFRI VLPPALPPPR DSTVPLPMLP EPMRVRKKLS 101: HQESVIFMSK SRFAEKILYK EEDFKCNAFC LSLPGFGKNK LIRSSSKRQN SMEKKMIRAS SFTGSTVSVR ASLEKFECGS WASTTALIQD NGRLFFDFPV 201: EMTKCNSRGG NGGRDVQEPV TSGFLFDRET ETLALRSVLK TRSTRDHRRS AESSPQRRVR FSTSSSSASV SCPTSPRTCI TPRLRKARDD FNTFLTAQNA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)