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AT1G30730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : FAD-binding Berberine family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G30720.1); Has 4813 Blast hits to 4783 proteins in 792 species: Archae - 53; Bacteria - 2083; Metazoa - 8; Fungi - 1639; Plants - 818; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G30730-MONOMEReggNOG:COG0277eggNOG:ENOG410JX5QEMBL:AC007060
EMBL:CP002684EnsemblPlants:AT1G30730EnsemblPlants:AT1G30730.1entrez:839953
Gene3D:3.30.465.10GeneID:839953GO:GO:0016614GO:GO:0050660
Gramene:AT1G30730.1hmmpanther:PTHR32448hmmpanther:PTHR32448:SF25HOGENOM:HOG000238933
InterPro:IPR006094InterPro:IPR012951InterPro:IPR016166InterPro:IPR016169
KEGG:ath:AT1G30730OMA:INFWRNEPfam:PF01565Pfam:PF08031
Pfscan:PS51387PhylomeDB:Q9SA88PIR:H86432PROSITE:PS51387
Proteomes:UP000006548RefSeq:NP_174360.1SMR:Q9SA88STRING:3702.AT1G30730.1
SUPFAM:SSF56176TAIR:AT1G30730UniGene:At.40495UniProt:Q9SA88
Coordinates (TAIR10) chr1:+:10900854..10902434
Molecular Weight (calculated) 58916.30 Da
IEP (calculated) 9.58
GRAVY (calculated) -0.13
Length 526 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKLLIICML LISVLVATSQ SQTDPETFLR CLVREGSNPQ VFISDVTYIP SNSSFTTVLR RRIPNLRFDK PTTPKPIAII TPTTWSHISP VLACARLFPV
101: QVRIRSGGHD FEGLSYTSTA PFFLIDLLNF KSVDVNLTEG TAWVDTGATL GELYYKIAEK SNVLGFPAGL CTTLGVGGHI SGGGYGTMMR KYGLSVDNVV
201: GSRIIDSNGN TYFDRMSMGE ELFWAVRGGG AASFGIVMGY KIRLVPVPEK VTVFSVGKTV GEGAVDLIMK WQNFSHSTDR NLFVKLTLTL VNGAKPGEKK
301: VLATFIGMNL GGFDKTLNVM NRDFPELKLK KTDCTEMRWI DSVLFWAGYP VGTPTSVLLN PTVTKKLFMK RKSDYVKRPV SRTGLGLILK KLVELEKVEM
401: NWNPYGGRMG EIPSSRTPFP HRGGNLFNIE YIIDWSEAGD NVEKKYLALA NEFYRFMTPY VSSNPREAFL NYRDIDIGSS GNSTYEEGKI YGAKYFKDNF
501: ERLVDIKTKF DEINFWRNEQ SIPVRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)