AT1G30610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pentatricopeptide (PPR) repeat-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Mutations in this locus result in embryo lethality. Embryo shape at seed maturity is globular. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
EMBRYO DEFECTIVE 2279 (EMB2279); INVOLVED IN: suspensor development, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G67570.1); Has 17514 Blast hits to 7499 proteins in 222 species: Archae - 1; Bacteria - 12; Metazoa - 167; Fungi - 55; Plants - 16537; Viruses - 1; Other Eukaryotes - 741 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:10846676..10850517 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 116102.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.86 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1006 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAVTISTNAF VNASLLDESR NSFWRPLFHQ PYYNCRRVVR LNSRKLNSKV MFCLNLNTKE VGLQKPGDKG FEFKPSFDQY LQIMESVKTA RKKKKFDRLK 0101: VEEDDGGGGN GDSVYEVKDM KIKSGELKDE TFRKRYSRQE IVSDKRNERV FKRNGEIENH RVATDLKWSK SGESSVALKL SKSGESSVTV PEDESFRKRY 0201: SKQEYHRSSD TSRGIERGSR GDELDLVVEE RRVQRIAKDA RWSKSRESSV AVKWSNSGES SVTMPKDESF RRRYSKQEHH RSSDTSRGIA RGSKGDELEL 0301: VVEERRVQRI AKDVRWSKSD ESLVPVSEDE SFRRGNPKQE MVRYQRVSDT SRGIERGSKG DGLDLLAEER RIERLANERH EIRSSKLSGT RRIGAKRNDD 0401: DDDSLFAMET PAFRFSDESS DIVDKPATSR VEMEDRIEKL AKVLNGADIN MPEWQFSKAI RSAKIRYTDY TVMRLIHFLG KLGNWRRVLQ VIEWLQRQDR 0501: YKSNKIRIIY TTALNVLGKS RRPVEALNVF HAMLLQISSY PDMVAYRSIA VTLGQAGHIK ELFYVIDTMR SPPKKKFKPT TLEKWDPRLE PDVVVYNAVL 0601: NACVQRKQWE GAFWVLQQLK QRGQKPSPVT YGLIMEVMLA CEKYNLVHEF FRKMQKSSIP NALAYRVLVN TLWKEGKSDE AVHTVEDMES RGIVGSAALY 0701: YDLARCLCSA GRCNEGLNMV NFVNPVVLKL IENLIYKADL VHTIQFQLKK ICRVANKPLV VTYTGLIQAC VDSGNIKNAA YIFDQMKKVC SPNLVTCNIM 0801: LKAYLQGGLF EEARELFQKM SEDGNHIKNS SDFESRVLPD TYTFNTMLDT CAEQEKWDDF GYAYREMLRH GYHFNAKRHL RMVLEASRAG KEEVMEATWE 0901: HMRRSNRIPP SPLIKERFFR KLEKGDHISA ISSLADLNGK IEETELRAFS TSAWSRVLSR FEQDSVLRLM DDVNRRLGSR SESSDSVLGN LLSSCKDYLK 1001: TRTHNL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)