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AT1G30610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pentatricopeptide (PPR) repeat-containing protein
Curator
Summary (TAIR10)
Mutations in this locus result in embryo lethality. Embryo shape at seed maturity is globular.
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 2279 (EMB2279); INVOLVED IN: suspensor development, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G67570.1); Has 17514 Blast hits to 7499 proteins in 222 species: Archae - 1; Bacteria - 12; Metazoa - 167; Fungi - 55; Plants - 16537; Viruses - 1; Other Eukaryotes - 741 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC007060EMBL:CP002684EnsemblPlants:AT1G30610EnsemblPlants:AT1G30610.1entrez:839941
ExpressionAtlas:Q9SA76Gene3D:1.25.40.10GeneID:839941Genevisible:Q9SA76GO:GO:0009507GO:GO:0009793hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF327HOGENOM:HOG000082730InParanoid:Q9SA76InterPro:IPR002885InterPro:IPR011990iPTMnet:Q9SA76ncoils:Coil
OMA:SAGRCNEPaxDb:Q9SA76Pfam:PF01535Pfam:PF13041Pfam:PF13812Pfam:Q9SA76Pfscan:PS51375
PhylomeDB:Q9SA76PIR:D86431PRIDE:Q9SA76PRO:PR:Q9SA76PROSITE:PS51375ProteinModelPortal:Q9SA76Proteomes:UP000006548
RefSeq:NP_174349.1SMR:Q9SA76STRING:3702.AT1G30610.1SUPFAM:SSF48452TAIR:AT1G30610tair10-symbols:EMB2279tair10-symbols:EMB88
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.51842UniProt:Q9SA76
Coordinates (TAIR10) chr1:+:10846676..10850517
Molecular Weight (calculated) 116102.00 Da
IEP (calculated) 9.86
GRAVY (calculated) -0.66
Length 1006 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAVTISTNAF VNASLLDESR NSFWRPLFHQ PYYNCRRVVR LNSRKLNSKV MFCLNLNTKE VGLQKPGDKG FEFKPSFDQY LQIMESVKTA RKKKKFDRLK
0101: VEEDDGGGGN GDSVYEVKDM KIKSGELKDE TFRKRYSRQE IVSDKRNERV FKRNGEIENH RVATDLKWSK SGESSVALKL SKSGESSVTV PEDESFRKRY
0201: SKQEYHRSSD TSRGIERGSR GDELDLVVEE RRVQRIAKDA RWSKSRESSV AVKWSNSGES SVTMPKDESF RRRYSKQEHH RSSDTSRGIA RGSKGDELEL
0301: VVEERRVQRI AKDVRWSKSD ESLVPVSEDE SFRRGNPKQE MVRYQRVSDT SRGIERGSKG DGLDLLAEER RIERLANERH EIRSSKLSGT RRIGAKRNDD
0401: DDDSLFAMET PAFRFSDESS DIVDKPATSR VEMEDRIEKL AKVLNGADIN MPEWQFSKAI RSAKIRYTDY TVMRLIHFLG KLGNWRRVLQ VIEWLQRQDR
0501: YKSNKIRIIY TTALNVLGKS RRPVEALNVF HAMLLQISSY PDMVAYRSIA VTLGQAGHIK ELFYVIDTMR SPPKKKFKPT TLEKWDPRLE PDVVVYNAVL
0601: NACVQRKQWE GAFWVLQQLK QRGQKPSPVT YGLIMEVMLA CEKYNLVHEF FRKMQKSSIP NALAYRVLVN TLWKEGKSDE AVHTVEDMES RGIVGSAALY
0701: YDLARCLCSA GRCNEGLNMV NFVNPVVLKL IENLIYKADL VHTIQFQLKK ICRVANKPLV VTYTGLIQAC VDSGNIKNAA YIFDQMKKVC SPNLVTCNIM
0801: LKAYLQGGLF EEARELFQKM SEDGNHIKNS SDFESRVLPD TYTFNTMLDT CAEQEKWDDF GYAYREMLRH GYHFNAKRHL RMVLEASRAG KEEVMEATWE
0901: HMRRSNRIPP SPLIKERFFR KLEKGDHISA ISSLADLNGK IEETELRAFS TSAWSRVLSR FEQDSVLRLM DDVNRRLGSR SESSDSVLGN LLSSCKDYLK
1001: TRTHNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)