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AT1G30580.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GTP binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GTP binding; FUNCTIONS IN: GTP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF933 (InterPro:IPR013029), TGS-like (InterPro:IPR012676), GTP1/OBG (InterPro:IPR006073), Conserved hypothetical protein CHP00092 (InterPro:IPR004396), GTP-binding protein, HSR1-related (InterPro:IPR002917), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: GTP-binding protein-related (TAIR:AT1G56050.1); Has 19150 Blast hits to 19146 proteins in 3028 species: Archae - 362; Bacteria - 11244; Metazoa - 716; Fungi - 612; Plants - 292; Viruses - 0; Other Eukaryotes - 5924 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0012eggNOG:KOG1491EMBL:AC007060EMBL:AY085845
EMBL:BT025965EMBL:CP002684EnsemblPlants:AT1G30580EnsemblPlants:AT1G30580.1
entrez:839938Gene3D:1.10.150.300Gene3D:3.10.20.30Gene3D:3.40.50.300
GeneID:839938Genevisible:Q9SA73GO:GO:0005524GO:GO:0005525
GO:GO:0005829GO:GO:0009506GO:GO:0009651GO:GO:0016887
GO:GO:0043022GO:GO:0043023GO:GO:0046686GO:GO:0046872
GO:GO:1901001Gramene:AT1G30580.1HAMAP:MF_00944hmmpanther:PTHR23305
HOGENOM:HOG000087628InParanoid:Q9SA73InterPro:IPR004396InterPro:IPR006073
InterPro:IPR012675InterPro:IPR012676InterPro:IPR013029InterPro:IPR023192
InterPro:IPR027417InterPro:IPR031167KEGG:ath:AT1G30580KO:K19788
OMA:LRFEDWNPaxDb:Q9SA73Pfam:PF01926Pfam:PF06071
Pfscan:PS51710PhylomeDB:Q9SA73PIR:A86431PIRSF:PIRSF006641
PRIDE:Q9SA73PRINTS:PR00326PRO:PR:Q9SA73PROSITE:PS51710
ProteinModelPortal:Q9SA73Proteomes:UP000006548RefSeq:NP_174346.1SMR:Q9SA73
STRING:3702.AT1G30580.1SUPFAM:SSF52540SUPFAM:SSF81271TAIR:AT1G30580
TIGRfam:TIGR00092TIGRFAMs:TIGR00092UniGene:At.40522UniProt:Q9SA73
Coordinates (TAIR10) chr1:-:10831953..10835454
Molecular Weight (calculated) 44473.50 Da
IEP (calculated) 6.80
GRAVY (calculated) -0.34
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MPPKAKAKDA GPVERPILGR FSSHLKIGIV GLPNVGKSTL FNTLTKLSIP AENFPFCTIE PNEARVNIPD ERFDWLCQTY KPKSEIPAFL EIHDIAGLVR
101: GAHEGQGLGN NFLSHIRAVD GIFHVLRAFE DADIIHVDDI VDPVRDLETI TEELRLKDIE FVGKKIDDVE KSMKRSNDKQ LKIELELLQK VKAWLEDGKD
201: VRFGDWKTAD IEILNTFQLL SAKPVVYLIN LNERDYQRKK NKFLPKIHAW VQEHGGDTMI PFSGVFERSL ADMAPDEAAK YCEENKLQSA LPRIIKTGFS
301: AINLIYFFTA GPDEVKCWQI RRQSKAPQAA GAIHTDFERG FICAEVMKFE DLKELGNEPA VKAAGKYRQE GKTYVVQDGD IIFFKFNVSG GGKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)