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AT1G30440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G03250.1); Has 895 Blast hits to 867 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 883; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:25158eggNOG:ENOG410IG6AeggNOG:ENOG410ZHWZEMBL:AC009917EMBL:CP002684EnsemblPlants:AT1G30440EnsemblPlants:AT1G30440.1
entrez:839923GeneID:839923Genevisible:Q9S9Q9GO:GO:0005886GO:GO:0016567Gramene:AT1G30440.1hmmpanther:PTHR32370
hmmpanther:PTHR32370:SF12HOGENOM:HOG000239180InParanoid:Q9S9Q9IntAct:Q9S9Q9InterPro:IPR000210InterPro:IPR011333InterPro:IPR027356
iPTMnet:Q9S9Q9KEGG:ath:AT1G30440MINT:MINT-7146888ncoils:CoilOMA:EHGGPMQPaxDb:Q9S9Q9Pfam:PF00651
Pfam:PF03000Pfam:Q9S9Q9Pfscan:PS50097Pfscan:PS51649PhylomeDB:Q9S9Q9PIR:G86428PRIDE:Q9S9Q9
PRO:PR:Q9S9Q9PROSITE:PS50097PROSITE:PS51649ProteinModelPortal:Q9S9Q9Proteomes:UP000006548RefSeq:NP_174332.1STRING:3702.AT1G30440.1
SUPFAM:SSF54695TAIR:AT1G30440UniGene:At.43839UniPathway:UPA00143UniProt:Q9S9Q9
Coordinates (TAIR10) chr1:+:10759475..10762199
Molecular Weight (calculated) 73414.20 Da
IEP (calculated) 6.78
GRAVY (calculated) -0.32
Length 665 amino acids
Sequence (TAIR10)
(BLAST)
001: MACMKLGSKS DAFQRQGQAW FCTTGLPSDI VVEVGEMSFH LHKFPLLSRS GVMERRIAEA SKEGDDKCLI EISDLPGGDK TFELVAKFCY GVKLELTASN
101: VVYLRCAAEH LEMTEEHGEG NLISQTETFF NQVVLKSWKD SIKALHSCDE VLEYADELNI TKKCIESLAM RASTDPNLFG WPVVEHGGPM QSPGGSVLWN
201: GISTGARPKH TSSDWWYEDA SMLSFPLFKR LITVMESRGI REDIIAGSLT YYTRKHLPGL KRRRGGPESS GRFSTPLGSG NVLSEEEQKN LLEEIQELLR
301: MQKGLVPTKF FVDMLRIAKI LKASPDCIAN LEKRIGMQLD QAALEDLVMP SFSHTMETLY DVDSVQRILD HFLGTDQIMP GGVGSPCSSV DDGNLIGSPQ
401: SITPMTAVAK LIDGYLAEVA PDVNLKLPKF QALAASIPEY ARLLDDGLYR AIDIYLKHHP WLAETERENL CRLLDCQKLS LEACTHAAQN ERLPLRIIVQ
501: VLFFEQLQLR TSVAGCFLVS DNLDGGSRQL RSGGYVGGPN EGGGGGGGWA TAVRENQVLK VGMDSMRMRV CELEKECSNM RQEIEKLGKT TKGGGSASNG
601: VGSKTWENVS KKLGFGFKLK SHQMCSAQEG SVSKSNNENV KIEKLKDVKE RRGKHKKASS ISSER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)