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AT1G30360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 16618929
TAIR : plasma membrane 17317660
TAIR : vacuole 15539469
TAIR : plastid 15028209
TAIR : plasma membrane 16618929
TAIR : plastid 12938931
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26091700 (2015): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16635983 (2006): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Early-responsive to dehydration stress protein (ERD4)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
early-responsive to dehydration 4 (ERD4); INVOLVED IN: response to water deprivation; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT4G02900.1); Has 1361 Blast hits to 1266 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 651; Plants - 396; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).
Protein Annotations
BioGrid:25151eggNOG:COG5594eggNOG:KOG1134EMBL:AB039928EMBL:AC025295EMBL:AK221977EMBL:AY035092
EMBL:AY042812EMBL:AY063056EMBL:CP002684EnsemblPlants:AT1G30360EnsemblPlants:AT1G30360.1entrez:839916ExpressionAtlas:Q9C8G5
GeneID:839916Genevisible:Q9C8G5GO:GO:0005773GO:GO:0005774GO:GO:0005886GO:GO:0006811GO:GO:0009506
GO:GO:0009507GO:GO:0009941GO:GO:0016020GO:GO:0016021Gramene:AT1G30360.1hmmpanther:PTHR13018hmmpanther:PTHR13018:SF22
HOGENOM:HOG000242132InParanoid:Q9C8G5InterPro:IPR003864InterPro:IPR027815InterPro:IPR032880iPTMnet:Q9C8G5KEGG:ath:AT1G30360
ncoils:CoilOMA:MDIASFVPaxDb:Q9C8G5Pfam:PF02714Pfam:PF13967Pfam:PF14703Pfam:Q9C8G5
PhylomeDB:Q9C8G5PIR:H86427PRIDE:Q9C8G5PRO:PR:Q9C8G5ProteinModelPortal:Q9C8G5Proteomes:UP000006548RefSeq:NP_564354.1
STRING:3702.AT1G30360.1SwissPalm:Q9C8G5TAIR:AT1G30360tair10-symbols:ERD4TMHMM:TMhelixUniGene:At.25329UniProt:A0A097NUQ9
UniProt:Q9C8G5
Coordinates (TAIR10) chr1:+:10715892..10718799
Molecular Weight (calculated) 81939.60 Da
IEP (calculated) 9.61
GRAVY (calculated) 0.30
Length 724 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFGSFLVSL GTSFVIFVIL MLLFTWLSRK SGNAPIYYPN RILKGLEPWE GTSLTRNPFA WMREALTSSE QDVVNLSGVD TAVHFVFLST VLGIFACSSL
101: LLLPTLLPLA ATDNNIKNTK NATDTTSKGT FSQLDNLSMA NITKKSSRLW AFLGAVYWIS LVTYFFLWKA YKHVSSLRAQ ALMSADVKPE QFAILVRDMP
201: APPDGQTQKE FIDSYFREIY PETFYRSLVA TENSKVNKIW EKLEGYKKKL ARAEAILAAT NNRPTNKTGF CGLVGKQVDS IEYYTELINE SVAKLETEQK
301: AVLAEKQQTA AVVFFTTRVA AASAAQSLHC QMVDKWTVTE APEPRQLLWQ NLNIKLFSRI IRQYFIYFFV AVTILFYMIP IAFVSAITTL KNLQRIIPFI
401: KPVVEITAIR TVLESFLPQI ALIVFLAMLP KLLLFLSKAE GIPSQSHAIR AASGKYFYFS VFNVFIGVTL AGTLFNTVKD IAKNPKLDMI INLLATSLPK
501: SATFFLTYVA LKFFIGYGLE LSRIIPLIIF HLKKKYLCKT EAEVKEAWYP GDLSYATRVP GDMLILTITF CYSVIAPLIL IFGITYFGLG WLVLRNQALK
601: VYVPSYESYG RMWPHIHQRI LAALFLFQVV MFGYLGAKTF FYTALVIPLI ITSLIFGYVC RQKFYGGFEH TALEVACREL KQSPDLEEIF RAYIPHSLSS
701: HKPEEHEFKG AMSRYQDFNA IAGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)