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AT1G30330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : auxin response factor 6
Curator
Summary (TAIR10)
Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167.
Computational
Description (TAIR10)
auxin response factor 6 (ARF6); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: flower development, response to auxin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 8 (TAIR:AT5G37020.1); Has 63215 Blast hits to 27346 proteins in 1335 species: Archae - 8; Bacteria - 4193; Metazoa - 21348; Fungi - 6939; Plants - 6324; Viruses - 577; Other Eukaryotes - 23826 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEQ9eggNOG:ENOG410YA3REMBL:GU348466EMBL:GU348467EMBL:GU348468EMBL:HM487441EMBL:HM487442
EMBL:HM487444EMBL:HM487445EMBL:HM487446EMBL:HM487449EMBL:HM487452EMBL:HM487453EnsemblPlants:AT1G30330
EnsemblPlants:AT1G30330.1entrez:839913ExpressionAtlas:D3K050ExpressionAtlas:E1A6L2ExpressionAtlas:E1A6L3ExpressionAtlas:E1A6L5ExpressionAtlas:E1A6L6
ExpressionAtlas:E1A6L7ExpressionAtlas:E1A6L9ExpressionAtlas:E1A6M1hmmpanther:PTHR31384hmmpanther:PTHR31384:SF3ncoils:CoilPaxDb:D3K049
PaxDb:D3K050PaxDb:D3K051PaxDb:D3K052PaxDb:E1A6L2PaxDb:E1A6L3PaxDb:E1A6L4PaxDb:E1A6L5
PaxDb:E1A6L7PaxDb:E1A6L8PaxDb:E1A6M0PaxDb:E1A6M1PaxDb:E1A6M2Pfam:PF02309Pfam:PF02362
Pfam:PF06507Pfscan:PS50863Pfscan:PS51745STRING:3702.AT1G30330.2SUPFAM:SSF54277tair10-symbols:ARF6UniProt:D3K048
UniProt:D3K049UniProt:D3K050UniProt:D3K051UniProt:D3K052UniProt:E1A6L2UniProt:E1A6L3UniProt:E1A6L4
UniProt:E1A6L5UniProt:E1A6L6UniProt:E1A6L7UniProt:E1A6L8UniProt:E1A6L9UniProt:E1A6M0UniProt:E1A6M1
UniProt:E1A6M2UniProt:E1A6M3
Coordinates (TAIR10) chr1:-:10686125..10690036
Molecular Weight (calculated) 103063.00 Da
IEP (calculated) 6.42
GRAVY (calculated) -0.55
Length 933 amino acids
Sequence (TAIR10)
(BLAST)
001: MRLSSAGFNP QPHEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)