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AT1G30135.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : jasmonate-zim-domain protein 8
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
jasmonate-zim-domain protein 8 (JAZ8); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 7 (TAIR:AT2G34600.1); Has 89 Blast hits to 89 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:25128DIP:DIP-53277NeggNOG:ENOG410J3NEeggNOG:ENOG410Z61E
EMBL:AC074176EMBL:AY087122EMBL:BT026098EMBL:CP002684
EnsemblPlants:AT1G30135EnsemblPlants:AT1G30135.1entrez:839893GeneID:839893
Genevisible:Q8LBM2GO:GO:0003714GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0006952GO:GO:0009611GO:GO:0031347
GO:GO:1903507GO:GO:2000022Gramene:AT1G30135.1hmmpanther:PTHR33077
hmmpanther:PTHR33077:SF17HOGENOM:HOG000242137InParanoid:Q8LBM2IntAct:Q8LBM2
InterPro:IPR010399InterPro:IPR018467KEGG:ath:AT1G30135OMA:RITIFYN
PaxDb:Q8LBM2Pfam:PF06200Pfam:PF09425Pfam:Q8LBM2
Pfscan:PS51320PhylomeDB:Q8LBM2PRIDE:Q8LBM2PRO:PR:Q8LBM2
PROSITE:PS51320Proteomes:UP000006548RefSeq:NP_564349.1SMART:SM00979
STRING:3702.AT1G30135.1TAIR:AT1G30135tair10-symbols:JAZ8tair10-symbols:TIFY5A
UniGene:At.40613UniProt:Q8LBM2
Coordinates (TAIR10) chr1:+:10596516..10597095
Molecular Weight (calculated) 14771.30 Da
IEP (calculated) 10.26
GRAVY (calculated) -0.93
Length 131 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLQQNCDLE LRLFPTSYDS DSSDTTSVVE STSSGNPQPN EESQRITIFY NGKMCFSSDV THLQARSIIS IASREMKTKS SSNGSDPPNK STSFHHNQLP
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)