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AT1G29990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : prefoldin 6
Curator
Summary (TAIR10)
Encodes a cytoplastic protein with similarity to yeast prefoldin6, a subunit of the prefoldin complex. The PFD complex is thought to function along with the TCP ring complex to properly fold microtubule proteins.
Computational
Description (TAIR10)
prefoldin 6 (PFD6); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding, cortical microtubule organization; LOCATED IN: prefoldin complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin (InterPro:IPR009053); Has 469 Blast hits to 469 proteins in 236 species: Archae - 55; Bacteria - 6; Metazoa - 162; Fungi - 121; Plants - 38; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQJPeggNOG:ENOG4111S9QEMBL:BT024577EMBL:CP002684EnsemblPlants:AT1G29990EnsemblPlants:AT1G29990.1entrez:839878
Gene3D:1.10.287.370GeneID:839878GO:GO:0005737GO:GO:0005829GO:GO:0006457GO:GO:0016272GO:GO:0043622
GO:GO:0051087GO:GO:0051131Gramene:AT1G29990.1hmmpanther:PTHR21431hmmpanther:PTHR21431:SF0HOGENOM:HOG000196242IntAct:Q2HIK4
InterPro:IPR002777InterPro:IPR009053KEGG:ath:AT1G29990KO:K04798ncoils:CoilOMA:TNTVYKLPfam:PF01920
PhylomeDB:Q2HIK4Proteomes:UP000006548RefSeq:NP_174292.2STRING:3702.AT1G29990.1SUPFAM:SSF46579TAIR:AT1G29990tair10-symbols:PFD6
UniGene:At.40636UniProt:Q2HIK4
Coordinates (TAIR10) chr1:+:10507666..10508821
Molecular Weight (calculated) 14857.00 Da
IEP (calculated) 9.71
GRAVY (calculated) -0.78
Length 129 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSTVRDLQ RDLENKANDL GKIQKDIGKN HQLRKKYTIQ LGENELVLKE LDLLEEDANV YKLIGPVLVK QDLAEANANV RKRIEYISAE LKRLDAILQD
101: MEEKQNNKRE TIMKLQQRLQ TIQAGKAKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)