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AT1G29980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function, DUF642
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT2G34510.1); Has 291 Blast hits to 264 proteins in 21 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKHFeggNOG:ENOG411248WEMBL:AC022455EMBL:CP002684EnsemblPlants:AT1G29980EnsemblPlants:AT1G29980.1entrez:839877
ExpressionAtlas:Q9C8S1Gene3D:2.60.120.260GeneID:839877GO:GO:0005886GO:GO:0031225Gramene:AT1G29980.1hmmpanther:PTHR31265
hmmpanther:PTHR31265:SF1HOGENOM:HOG000231422InterPro:IPR006946InterPro:IPR008979KEGG:ath:AT1G29980OMA:HAGDSCKPfam:PF04862
PhylomeDB:Q9C8S1PIR:F86423Proteomes:UP000006548RefSeq:NP_564344.1STRING:3702.AT1G29980.1SUPFAM:SSF49785TAIR:AT1G29980
TMHMM:TMhelixUniGene:At.17979UniProt:Q9C8S1
Coordinates (TAIR10) chr1:-:10503411..10505994
Molecular Weight (calculated) 44298.20 Da
IEP (calculated) 4.43
GRAVY (calculated) -0.09
Length 407 amino acids
Sequence (TAIR10)
(BLAST)
001: MVPSNNRCKW SSIFLFLLSV SVAVLVAVAD DKSPAVEDGL VINGDFETSP SSGFPDDGVT DGPSDIPSWK SNGTVELINS GQKQGGMILI VPQGRHAVRL
101: GNDAEISQDL TVEKGFVYSV TFSAARTCAQ LESINVSVAS VNADADDMLA SRNVDLQTLY SVQGWDPYAW AFEAEDDHVR LVFKNPGMED DPTCGPIIDD
201: IAIKKLFTPD KPKDNAVING DFEDGPWMFR NTSLGVLLPT NLDEEISSLP GWTVESNRAV RFVDSDHFSV PKGKRAVELL SGKEGIISQM VETKADKPYI
301: LSFSLGHAGD KCKEPLAIMA FAGDQAQNFH YMAQANSSFE KAGLNFTAKA DRTRVAFYSV YYNTRTDDMS SLCGPVIDDV RVWFSGSKRI GAGFGFWVFV
401: LLVVGLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)