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AT1G29970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 60S ribosomal protein L18A-1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
60S ribosomal protein L18A-1 (RPL18AA); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT1G17080.1); Has 128 Blast hits to 128 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2157eggNOG:KOG0829EMBL:AK229311EMBL:BT030607EnsemblPlants:AT1G29970EnsemblPlants:AT1G29970.1entrez:839876
ExpressionAtlas:Q0WNX5GeneID:839876GO:GO:0005840GO:GO:0016021Gramene:AT1G29970.1hmmpanther:PTHR10052hmmpanther:PTHR10052:SF9
Pfam:Q8L9S1PhylomeDB:Q0WNX5PhylomeDB:Q8L9S1PRIDE:Q8L9S1Reactome:R-ATH-156827RefSeq:NP_564343.1STRING:3702.AT1G29970.2
TAIR:AT1G29970tair10-symbols:RPL18AATMHMM:TMhelixUniGene:At.40639UniProt:Q0WNX5UniProt:Q8L9S1
Coordinates (TAIR10) chr1:-:10499952..10501311
Molecular Weight (calculated) 17474.10 Da
IEP (calculated) 5.41
GRAVY (calculated) 0.15
Length 158 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEEAAKPRD STVNQQHQYY YGTFQGVANF PTPTPPPQFM QPQHPITTFP GHAYQNLQGH GGGVNYAQGF PVVVPDYTVV EVRPMIEHEL PCCGLGMGWF
101: LFIMGFLFGG IPWYLGAFIV LVTSVDHREK AGYVACSIAS VVYLIAVMLG MTGDINIW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)