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AT1G29920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : chlorophyll A/B-binding protein 2
Curator
Summary (TAIR10)
Encodes lhcb1.1 a component of the LHCIIb light harvesting complex associated with photosystem II.
Computational
Description (TAIR10)
chlorophyll A/B-binding protein 2 (CAB2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast; EXPRESSED IN: 13 plant structures; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 3 (TAIR:AT1G29910.1); Has 2420 Blast hits to 2340 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2091; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).
Protein Annotations
BioGrid:25104BioGrid:25105DNASU:839869DNASU:839870eggNOG:ENOG410IU0XeggNOG:ENOG410ZHBUEMBL:AC008030
EMBL:AY052237EMBL:AY054198EMBL:AY060500EMBL:AY062814EMBL:AY081572EMBL:AY086905EMBL:AY128345
EMBL:BT000726EMBL:CP002684EMBL:X03907EnsemblPlants:AT1G29910.1EnsemblPlants:AT1G29920EnsemblPlants:AT1G29920.1entrez:839869
entrez:839870ExpressionAtlas:P0CJ48Gene3D:1.10.3460.10GeneID:839869GeneID:839870Genevisible:P0CJ48GO:GO:0009507
GO:GO:0009522GO:GO:0009523GO:GO:0009535GO:GO:0009579GO:GO:0009637GO:GO:0009750GO:GO:0009768
GO:GO:0009941GO:GO:0010114GO:GO:0010218GO:GO:0010287GO:GO:0016021GO:GO:0016168GO:GO:0018298
GO:GO:0031409GO:GO:0046872GO:GO:0048046Gramene:AT1G29910.1Gramene:AT1G29920.1HOGENOM:HOG000238032InParanoid:P0CJ48
IntAct:P0CJ48InterPro:IPR022796InterPro:IPR023329iPTMnet:P0CJ48KEGG:ath:AT1G29910KEGG:ath:AT1G29920KO:K08912
PaxDb:P0CJ48PDB:4YZHPDBsum:4YZHPfam:P0CJ48Pfam:PF00504Pfam:Q8VZ87PhylomeDB:P0CJ48
PIR:A29280PRIDE:P0CJ48PRO:PR:P0CJ48ProteinModelPortal:P0CJ48Proteomes:UP000006548RefSeq:NP_564339.1RefSeq:NP_564340.1
SMR:P0CJ48STRING:3702.AT1G29920.1SUPFAM:0043399SUPFAM:SSF103511TAIR:AT1G29920tair10-symbols:AB165tair10-symbols:CAB2
tair10-symbols:LHCB1.1UniGene:At.10812UniGene:At.24351UniGene:At.27031UniGene:At.32199UniGene:At.43708UniGene:At.49175
UniGene:At.66422UniGene:At.70617UniGene:At.71449UniGene:At.71528UniGene:At.71547UniProt:P0CJ48UniProt:Q8VZ87
Coordinates (TAIR10) chr1:-:10475089..10475892
Molecular Weight (calculated) 28228.60 Da
IEP (calculated) 5.09
GRAVY (calculated) 0.02
Length 267 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)