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AT1G29850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.992
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : double-stranded DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
double-stranded DNA-binding family protein; FUNCTIONS IN: double-stranded DNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding TFAR19-related protein (InterPro:IPR002836); Has 689 Blast hits to 689 proteins in 324 species: Archae - 253; Bacteria - 2; Metazoa - 140; Fungi - 128; Plants - 54; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2118eggNOG:KOG3431EMBL:AC008030EMBL:AY045844EMBL:AY057536EMBL:AY096627EMBL:CP002684
EnsemblPlants:AT1G29850EnsemblPlants:AT1G29850.1entrez:839863ExpressionAtlas:Q9FXG0Gene3D:1.10.8.140GeneID:839863GO:GO:0003677
Gramene:AT1G29850.1hmmpanther:PTHR10840hmmpanther:PTHR10840:SF0IntAct:Q9FXG0InterPro:IPR002836PANTHER:PTHR10840Pfam:PF01984
PhylomeDB:Q9FXG0PIR:A86422PIRSF:PIRSF015730Proteomes:UP000006548RefSeq:NP_564336.1SMR:Q9FXG0STRING:3702.AT1G29850.3
SUPFAM:SSF46950TAIR:AT1G29850UniGene:At.22177UniProt:Q9FXG0
Coordinates (TAIR10) chr1:+:10447866..10449630
Molecular Weight (calculated) 14976.00 Da
IEP (calculated) 9.79
GRAVY (calculated) -1.06
Length 129 amino acids
Sequence (TAIR10)
(BLAST)
001: MADPELEAIR QRRMQELMAR QGMGKQGNQQ NPEQEKQQED AKREADERRQ MMLSQVLSSQ ARERIARIAL VKPEKARGVE DVILRAAQMG QIVEKVSEER
101: LITLLEQINS QTTKQTKVTY QRRRGVDDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)