AT1G29750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor-like kinase in flowers 1 | ||||||||||||
| Curator Summary (TAIR10) |
Receptor-like serine/threonine kinase (RKF1). The putative extracellular domain of the RKF1 protein contains 13 tandem repeats of leucine-rich sequences. Expressed in early flower primordial, stamen, and pollen grains. | ||||||||||||
| Computational Description (TAIR10) |
receptor-like kinase in flowers 1 (RKF1); FUNCTIONS IN: protein serine/threonine kinase activity, receptor signaling protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT3G14840.2); Has 173202 Blast hits to 127607 proteins in 4540 species: Archae - 123; Bacteria - 16384; Metazoa - 47938; Fungi - 10258; Plants - 77889; Viruses - 389; Other Eukaryotes - 20221 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:10414071..10419813 | ||||||||||||
| Molecular Weight (calculated) | 111532.00 Da | ||||||||||||
| IEP (calculated) | 7.58 | ||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||
| Length | 1006 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MIVKAKKSVI LVVAQVIELI FYDVCFCVCS LVDALQQIAT TLGSKFWKFD AENCKIEMVG LTETPPPTAK QEIECECSPT NDTDCHVVKF AFKDHNLPGT 0101: LPQIVKLPYL REIDLAYNYI NGTLPREWAS SNLTFISLLV NRLSGEIPKE FGNSSLTYLD LESNAFSGTI PQELGNLVHL KKLLLSSNKL TGTLPASLAR 0201: LQNMTDFRIN DLQLSGTIPS YIQNWKQLER LEMIASGLTG PIPSVISVLS NLVNLRISDI RGPVQPFPSL KNVTGLTKII LKNCNISGQI PTYLSHLKEL 0301: ETLDLSFNKL VGGIPSFAQA ENLRFIILAG NMLEGDAPDE LLRDGITVDL SYNNLKWQSP ESRACRPNMN LNLNLFQSTS TKKSSKFLPC IKDFKCPRYS 0401: SCLHVNCGGS DMYVKEKKTK ELYEGDGNVE GGAAKYFLKP DANWGFSSTG DFMDDNNFQN TRFTMFVPAS NQSDLYKSAR IAPVSLTYFH ACLENGNYTI 0501: NLDFAEIRFT NDENYNRLGR RLFDIYIQEK LVAKDFNIMD EAKGAQTPII KPLTAYVTNH FLTIRLSWAG KGTTRIPTRG VYGPIISAIS IVSDSKPCER 0601: PKTGMSPGAY IAIGIGAPCL IIFILGFLWI CGCLPRCGRQ RKDPYEEELP SGTFTLRQIK FATDDFNPTN KIGEGGFGAV FKGVLADGRV VAVKQLSSKS 0701: RQGNREFLNE IGAISCLQHP NLVKLHGFCV ERAQLLLAYE YMENNSLSSA LFSPKHKQIP MDWPTRFKIC CGIAKGLAFL HEESPLKFVH RDIKATNILL 0801: DKDLTPKISD FGLARLDEEE KTHISTKVAG TIGYMAPEYA LWGYLTFKAD VYSFGVLVLE IVAGITNSNF MGAGDSVCLL EFANECVESG HLMQVVDERL 0901: RPEVDRKEAE AVIKVALVCS SASPTDRPLM SEVVAMLEGL YPVPESTPGV SRNAGDIRFK AFKDLRRGME NNSKTQCSVK SYPSSSSTSS GAGQAVQERK 1001: KEESRP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)