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AT1G29750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : receptor-like kinase in flowers 1
Curator
Summary (TAIR10)
Receptor-like serine/threonine kinase (RKF1). The putative extracellular domain of the RKF1 protein contains 13 tandem repeats of leucine-rich sequences. Expressed in early flower primordial, stamen, and pollen grains.
Computational
Description (TAIR10)
receptor-like kinase in flowers 1 (RKF1); FUNCTIONS IN: protein serine/threonine kinase activity, receptor signaling protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT3G14840.2); Has 173202 Blast hits to 127607 proteins in 4540 species: Archae - 123; Bacteria - 16384; Metazoa - 47938; Fungi - 10258; Plants - 77889; Viruses - 389; Other Eukaryotes - 20221 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G29750EnsemblPlants:AT1G29750.1entrez:839853hmmpanther:PTHR27006hmmpanther:PTHR27006:SF3Pfam:PF07714Pfam:PF11721
Pfscan:PS50011scanprosite:PS00107scanprosite:PS00108tair10-symbols:RKF1TMHMM:TMhelix
Coordinates (TAIR10) chr1:-:10414071..10419813
Molecular Weight (calculated) 111532.00 Da
IEP (calculated) 7.58
GRAVY (calculated) -0.14
Length 1006 amino acids
Sequence (TAIR10)
(BLAST)
0001: MIVKAKKSVI LVVAQVIELI FYDVCFCVCS LVDALQQIAT TLGSKFWKFD AENCKIEMVG LTETPPPTAK QEIECECSPT NDTDCHVVKF AFKDHNLPGT
0101: LPQIVKLPYL REIDLAYNYI NGTLPREWAS SNLTFISLLV NRLSGEIPKE FGNSSLTYLD LESNAFSGTI PQELGNLVHL KKLLLSSNKL TGTLPASLAR
0201: LQNMTDFRIN DLQLSGTIPS YIQNWKQLER LEMIASGLTG PIPSVISVLS NLVNLRISDI RGPVQPFPSL KNVTGLTKII LKNCNISGQI PTYLSHLKEL
0301: ETLDLSFNKL VGGIPSFAQA ENLRFIILAG NMLEGDAPDE LLRDGITVDL SYNNLKWQSP ESRACRPNMN LNLNLFQSTS TKKSSKFLPC IKDFKCPRYS
0401: SCLHVNCGGS DMYVKEKKTK ELYEGDGNVE GGAAKYFLKP DANWGFSSTG DFMDDNNFQN TRFTMFVPAS NQSDLYKSAR IAPVSLTYFH ACLENGNYTI
0501: NLDFAEIRFT NDENYNRLGR RLFDIYIQEK LVAKDFNIMD EAKGAQTPII KPLTAYVTNH FLTIRLSWAG KGTTRIPTRG VYGPIISAIS IVSDSKPCER
0601: PKTGMSPGAY IAIGIGAPCL IIFILGFLWI CGCLPRCGRQ RKDPYEEELP SGTFTLRQIK FATDDFNPTN KIGEGGFGAV FKGVLADGRV VAVKQLSSKS
0701: RQGNREFLNE IGAISCLQHP NLVKLHGFCV ERAQLLLAYE YMENNSLSSA LFSPKHKQIP MDWPTRFKIC CGIAKGLAFL HEESPLKFVH RDIKATNILL
0801: DKDLTPKISD FGLARLDEEE KTHISTKVAG TIGYMAPEYA LWGYLTFKAD VYSFGVLVLE IVAGITNSNF MGAGDSVCLL EFANECVESG HLMQVVDERL
0901: RPEVDRKEAE AVIKVALVCS SASPTDRPLM SEVVAMLEGL YPVPESTPGV SRNAGDIRFK AFKDLRRGME NNSKTQCSVK SYPSSSSTSS GAGQAVQERK
1001: KEESRP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)