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AT1G29700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Metallo-hydrolase/oxidoreductase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Metallo-hydrolase/oxidoreductase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 404 Blast hits to 404 proteins in 124 species: Archae - 0; Bacteria - 197; Metazoa - 0; Fungi - 2; Plants - 43; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2220eggNOG:ENOG410IFEPEMBL:AC068667EMBL:AC079288
EMBL:AY042829EMBL:AY072516EMBL:CP002684EnsemblPlants:AT1G29700
EnsemblPlants:AT1G29700.1entrez:839847Gene3D:3.60.15.10GeneID:839847
GO:GO:0009507Gramene:AT1G29700.1hmmpanther:PTHR36142hmmpanther:PTHR36142:SF2
HOGENOM:HOG000232903InterPro:IPR001279KEGG:ath:AT1G29700OMA:YYEPHGY
Pfam:PF13483PhylomeDB:Q9C535PIR:D86420Proteomes:UP000006548
RefSeq:NP_564334.1STRING:3702.AT1G29700.1SUPFAM:SSF56281TAIR:AT1G29700
UniGene:At.24951UniProt:Q9C535
Coordinates (TAIR10) chr1:-:10385196..10386906
Molecular Weight (calculated) 38153.50 Da
IEP (calculated) 6.06
GRAVY (calculated) 0.07
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: MALVVSGGKA AMMPLHANSL PLSINTKSRV LSASAFPLFS STPHLPSRSL SIRLSPNVSR SLTVVSSVLS EDRATNVSGS GTDAFKLTYL EGNSWLWETA
101: GLKILVDPIL VGNLDFGIPW LYDAAKRYLK AFKLDDLPEV DCLLITQSLD DHCHLNTLRP LSEKSPGIKV IATPNAKPLL DPLFSNVTYL EPGDSFELNA
201: RNGSKVRVKA TAGPVLGPPW QRPENGYLLV SPEDQISLYY EPHCVCNMEL LKNERADIVI TPVIKQLLPR FTLVSGQEDA VQLAKLLKAK FVVPMQNGEL
301: EAKGLLASLV KKEGTIESFK ELLLKELPEA QVLEPIAGIP LEILVPSSDI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)