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AT1G29680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.600
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1264)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1264); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1264 (InterPro:IPR010686); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1264) (TAIR:AT5G45690.1); Has 286 Blast hits to 286 proteins in 122 species: Archae - 0; Bacteria - 120; Metazoa - 0; Fungi - 64; Plants - 100; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
DNASU:839845eggNOG:ENOG410II9XeggNOG:ENOG410XS75EMBL:AC068667
EMBL:AK118004EMBL:BT005255EMBL:CP002684EnsemblPlants:AT1G29680
EnsemblPlants:AT1G29680.1entrez:839845GeneID:839845Gramene:AT1G29680.1
hmmpanther:PTHR31360hmmpanther:PTHR31360:SF1HOGENOM:HOG000176802IntAct:Q9C7N3
InterPro:IPR010686KEGG:ath:AT1G29680OMA:MADYWKQPfam:PF06884
PhylomeDB:Q9C7N3PIR:B86420Proteomes:UP000006548RefSeq:NP_174261.1
STRING:3702.AT1G29680.1TAIR:AT1G29680UniGene:At.48247UniGene:At.71163
UniProt:Q9C7N3
Coordinates (TAIR10) chr1:-:10377900..10378931
Molecular Weight (calculated) 26877.10 Da
IEP (calculated) 6.42
GRAVY (calculated) -0.47
Length 237 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSGGDDQV PPGGPMTVST RLIDAGSTIM QRRLPVKQMN THVSTFAIYG GDMSRLIGTH HYVHRVNDEF LQCAVYASDR SDAPLIGIEY VISDRLYETL
101: SEDEQKLWHS HAYEVKSGSW AYPRLPEVVA APELKNIAKT YGKFWCTWQI DRGDKLPMGA PELMMSPQGV GQGVLRPELV KRRDEKYNIS TDDLKHTRAE
201: IAEPEWINPM ADYWKQHGKC FVLDIATVEM NRHAQFP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)