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AT1G29670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plastid 15028209
SwissProt : extracellular 16381842
TAIR : plastid 15028209
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23851315 (2013): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: apoplast, cell wall, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G29660.1); Has 3712 Blast hits to 3673 proteins in 308 species: Archae - 0; Bacteria - 502; Metazoa - 0; Fungi - 62; Plants - 3128; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G29670-MONOMERBioGrid:25079EC:3.1.1.-eggNOG:ENOG410IJRWeggNOG:ENOG410YD3PEMBL:AC068667EMBL:AY065046
EMBL:AY086296EMBL:CP002684EnsemblPlants:AT1G29670EnsemblPlants:AT1G29670.1entrez:839844Gene3D:3.40.50.1110GeneID:839844
Genevisible:Q9C7N4GO:GO:0005618GO:GO:0009507GO:GO:0009534GO:GO:0016042GO:GO:0016788GO:GO:0048046
Gramene:AT1G29670.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF120HOGENOM:HOG000237649InParanoid:Q9C7N4InterPro:IPR001087InterPro:IPR013830
iPTMnet:Q9C7N4KEGG:ath:AT1G29670OMA:FMPAVYSPaxDb:Q9C7N4Pfam:PF00657Pfam:Q9C7N4PhylomeDB:Q9C7N4
PIR:A86420PRIDE:Q9C7N4PRO:PR:Q9C7N4ProteinModelPortal:Q9C7N4Proteomes:UP000006548RefSeq:NP_174260.1STRING:3702.AT1G29670.1
SUPFAM:SSF52266TAIR:AT1G29670UniGene:At.48247UniGene:At.71163UniProt:Q9C7N4
Coordinates (TAIR10) chr1:+:10375843..10377717
Molecular Weight (calculated) 39874.00 Da
IEP (calculated) 8.63
GRAVY (calculated) -0.15
Length 363 amino acids
Sequence (TAIR10)
(BLAST)
001: MESYLTKWCV VLVLLCFGFS VVKAQAQAQV PCFFVFGDSL VDNGNNNGLI SIARSNYFPY GIDFGGPTGR FSNGKTTVDV IAELLGFNGY IPAYNTVSGR
101: QILSGVNYAS AAAGIREETG RQLGQRISFS GQVRNYQTTV SQVVQLLGDE TRAADYLKRC IYSVGLGSND YLNNYFMPTF YSSSRQFTPE QYANDLISRY
201: STQLNALYNY GARKFALSGI GAVGCSPNAL AGSPDGRTCV DRINSANQIF NNKLRSLVDQ LNNNHPDAKF IYINAYGIFQ DMITNPARFG FRVTNAGCCG
301: IGRNAGQITC LPGQRPCRDR NAYVFWDAFH PTEAANVIIA RRSYNAQSAS DAYPMDISRL AQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)