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AT1G29660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : nucleus 14617066
SwissProt : extracellular 16381842
TAIR : nucleus 14617066
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: apoplast, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G29670.1); Has 3857 Blast hits to 3814 proteins in 365 species: Archae - 0; Bacteria - 608; Metazoa - 0; Fungi - 87; Plants - 3137; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G29660-MONOMEREC:3.1.1.-eggNOG:ENOG410IJRWeggNOG:ENOG410YD3PEMBL:AC068667EMBL:AY050413EMBL:AY088437
EMBL:AY133560EMBL:CP002684EnsemblPlants:AT1G29660EnsemblPlants:AT1G29660.1entrez:839843Gene3D:3.40.50.1110GeneID:839843
Genevisible:Q9C7N5GO:GO:0005634GO:GO:0009627GO:GO:0016042GO:GO:0016788GO:GO:0048046Gramene:AT1G29660.1
hmmpanther:PTHR22835hmmpanther:PTHR22835:SF120HOGENOM:HOG000237649InParanoid:Q9C7N5InterPro:IPR001087InterPro:IPR013830KEGG:ath:AT1G29660
OMA:GTTCVERPaxDb:Q9C7N5Pfam:PF00657Pfam:Q9C7N5PhylomeDB:Q9C7N5PIR:H86419PRIDE:Q9C7N5
PRO:PR:Q9C7N5ProteinModelPortal:Q9C7N5Proteomes:UP000006548RefSeq:NP_174259.1STRING:3702.AT1G29660.1SUPFAM:SSF52266TAIR:AT1G29660
UniGene:At.17861UniProt:Q9C7N5
Coordinates (TAIR10) chr1:+:10371955..10373624
Molecular Weight (calculated) 40144.00 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.22
Length 364 amino acids
Sequence (TAIR10)
(BLAST)
001: MESYLRKWCL VSVWVLLLGL GFKVKAEPQV PCYFIFGDSL VDNGNNNRLR SIARADYFPY GIDFGGPTGR FSNGRTTVDV LTELLGFDNY IPAYSTVSGQ
101: EILQGVNYAS AAAGIREETG AQLGQRITFS GQVENYKNTV AQVVEILGDE YTAADYLKRC IYSVGMGSND YLNNYFMPQF YSTSRQYTPE QYADDLISRY
201: RDQLNALYNY GARKFALVGI GAIGCSPNAL AQGSQDGTTC VERINSANRI FNNRLISMVQ QLNNAHSDAS FTYINAYGAF QDIIANPSAY GFTNTNTACC
301: GIGRNGGQLT CLPGEPPCLN RDEYVFWDAF HPSAAANTAI AKRSYNAQRS SDVYPIDISQ LAQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)