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AT1G29500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SAUR-like auxin-responsive protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G29450.1); Has 853 Blast hits to 839 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 853; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JDNNeggNOG:ENOG410YP87EMBL:AC068667EMBL:AY075651
EMBL:AY097401EMBL:CP002684EnsemblPlants:AT1G29500EnsemblPlants:AT1G29500.1
entrez:839827GeneID:839827Genevisible:Q9C7Q1GO:GO:0005634
GO:GO:0005730GO:GO:0005886GO:GO:0007275GO:GO:0009734
GO:GO:0009926GO:GO:0046620Gramene:AT1G29500.1hmmpanther:PTHR31175
hmmpanther:PTHR31175:SF1HOGENOM:HOG000239977InParanoid:Q9C7Q1InterPro:IPR003676
KEGG:ath:AT1G29500OMA:CHYANSAPaxDb:Q9C7Q1Pfam:PF02519
Pfam:Q9C7Q1PhylomeDB:Q9C7Q1PIR:H86417PRIDE:Q9C7Q1
PRO:PR:Q9C7Q1Proteomes:UP000006548RefSeq:NP_174243.1STRING:3702.AT1G29500.1
TAIR:AT1G29500UniGene:At.17838UniProt:Q9C7Q1
Coordinates (TAIR10) chr1:+:10321290..10321697
Molecular Weight (calculated) 15665.10 Da
IEP (calculated) 10.26
GRAVY (calculated) -0.26
Length 135 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNTKKLIKM FRKWQQRAAL HRKRISFQRP STRSTTVEKG CFVVYTADNT RFAFPISYLS NSVFQEILEI SEEEFGLPTG GPITLPFDSV FLEYLIKLIK
101: RRMDGDTEKA LLMSISSARC SLQKQEQSTQ QLLVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)