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AT1G29220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transcriptional regulator family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transcriptional regulator family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HCNGP-like (InterPro:IPR012479); Has 6494 Blast hits to 2810 proteins in 258 species: Archae - 2; Bacteria - 128; Metazoa - 3549; Fungi - 437; Plants - 298; Viruses - 183; Other Eukaryotes - 1897 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111K05eggNOG:KOG2959EMBL:AC021043EMBL:AK229408EMBL:BT029536EMBL:CP002684EnsemblPlants:AT1G29220
EnsemblPlants:AT1G29220.1entrez:839796ExpressionAtlas:Q9LP50GeneID:839796GO:GO:0006355Gramene:AT1G29220.1hmmpanther:PTHR13464
HOGENOM:HOG000153063IntAct:Q9LP50InterPro:IPR012479ncoils:CoilPANTHER:PTHR13464Pfam:PF07818PhylomeDB:Q9LP50
PIR:F86414Proteomes:UP000006548RefSeq:NP_564324.1STRING:3702.AT1G29220.2TAIR:AT1G29220UniGene:At.40784UniGene:At.68982
UniProt:Q9LP50
Coordinates (TAIR10) chr1:-:10210678..10212571
Molecular Weight (calculated) 39006.50 Da
IEP (calculated) 4.43
GRAVY (calculated) -1.08
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPKKSEGIA LLSVYSDEDD EEMEDAEEEE EEDEKQRNQE ESEKIIEEDQ VEEANYMDEE EKGRGGEDSR TPRLLDGVGA SSSAHGTPRS LDNDESSRPD
101: WSNRMIGESG VADGERGDDA SGESSDTLLD QFLPPRPRER CSEELQRKID KFLSLKKMGK SFNSEVRNRK EYRNPDFLLH AVSYQDIDQI GSCFSKDVFD
201: PSGYDPSDFC DAIEIDMKNE RERKEQESKK NQKLDFVSAG TQPGAVFAAQ KPNIPIPGIP ALATSGLPSI PTEIAARDGR PNKKSKWDKV DGDVKNPPLA
301: AGTQDSISSI RSNAALVSAT SAGSGYSAFA QQRRREVEGR RSSERKLERR S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)