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AT1G29200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.434
golgi 0.316
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : O-fucosyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G62330.1); Has 819 Blast hits to 814 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 819; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIH8eggNOG:ENOG410YEG1EMBL:AY924689EMBL:CP002684
EMBL:DQ132669EnsemblPlants:AT1G29200EnsemblPlants:AT1G29200.1entrez:839795
ExpressionAtlas:Q5BPY9GeneID:839795GO:GO:0016757Gramene:AT1G29200.1
hmmpanther:PTHR31933hmmpanther:PTHR31933:SF2HOGENOM:HOG000240134InterPro:IPR019378
InterPro:IPR024709KEGG:00514+2.4.1.221Pfam:PF10250PhylomeDB:Q5BPY9
PIRSF:PIRSF009360Proteomes:UP000006548RefSeq:NP_174215.2TAIR:AT1G29200
UniGene:At.40784UniGene:At.51818unipathway:UPA00378UniProt:Q5BPY9
Coordinates (TAIR10) chr1:+:10208425..10210488
Molecular Weight (calculated) 55980.60 Da
IEP (calculated) 9.59
GRAVY (calculated) -0.38
Length 495 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIKNGAVDA SPVQMYSRLL NLASDSLAKN EFKPDTPNFR EERSSKSSQW KPCADNNKAA VALERSRELS NGYIMVSANG GLNQQRVAIC NAVAVAALLN
101: ATLVLPRFLY SNVWKDPSQF GDIYQEDHFI EYLKDEVNIV KNLPQHLKST DNKNLSLVTD TELVKEATPV DYIEHVLPLL KKYGMVHLFG YGNRLGFDPL
201: PFDVQRLRCK CNFHALKFAP KIQEAGSLLV KRIRRFKTSR SRLEEALLGE SMVKSTVKGE EEPLKYLALH LRFEEDMVAY SLCDFGGGEA ERKELQAYRE
301: DHFPLLLKRL KKSKPVSPEE LRKTGKCPLT PEEATLVLAG LGFKRKTYIY LAGSQIYGGS SRMLPLTRLY PNIATKETLL TPQELAPFKN FSSQLAALDF
401: IACIASDVFA MTDSGSQLSS LVSGFRNYYG NGQAPTLRPN KKRLAAILSD SETIKWKIFE DRVRKMVEEG QKLRTRPYGR SIYRQPRCPE CMCKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)