suba logo
AT1G29120.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
peroxisome 0.777
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Hydrolase-like protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Hydrolase-like protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G25770.1); Has 731 Blast hits to 728 proteins in 173 species: Archae - 0; Bacteria - 8; Metazoa - 122; Fungi - 309; Plants - 167; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41109CSeggNOG:KOG4372EMBL:AK176749EMBL:BT015769EMBL:CP002684EnsemblPlants:AT1G29120EnsemblPlants:AT1G29120.1
EnsemblPlants:AT1G29120.2entrez:839787ESTHER:arath-AT1G29120ExpressionAtlas:Q67XR9Gene3D:3.40.50.1820GeneID:839787GO:GO:0016787
Gramene:AT1G29120.1Gramene:AT1G29120.2hmmpanther:PTHR12482hmmpanther:PTHR12482:SF11IntAct:Q67XR9InterPro:IPR007751InterPro:IPR029058
Pfam:PF05057PhylomeDB:Q67XR9Proteomes:UP000006548RefSeq:NP_174207.2RefSeq:NP_973935.1SMR:Q67XR9STRING:3702.AT1G29120.5
SUPFAM:SSF53474TAIR:AT1G29120UniGene:At.40802UniGene:At.67799UniProt:Q67XR9
Coordinates (TAIR10) chr1:+:10174481..10178143
Molecular Weight (calculated) 49922.40 Da
IEP (calculated) 10.21
GRAVY (calculated) -0.27
Length 455 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTASSWIQQ PPFRYLPDRG GFSKPSSRSA RQFSSGVVSA SASSPSPSSS CSCGYSEILN FDFGSNRSWN QQGRRVQAMS STAQRKFSLS KGDSDDKNEP
101: DHLLVLVHGI LASPSDWLYV EAELKRRLGR RFLIYASSSN TFTKTFGGID GAGKRLAEEV RQVVQKSKSL KKISFLAHSL GGLFSRHAVA VLYSAAMAQV
201: SDVAVSQSGN SNLLRGRIAG LEPINFITLA TPHLGVRGRK QLPFLLGVPI LEKLAAPIAP FFVGRTGSQL FLTDGKADKP PLLLRMASDG EDLKFLSALG
301: AFRSRIIYAN VSYDHMVGWR TSSIRRETEL IKPSRRSLDG YKHVVDVEYC PPVSSDGAHF PPEAAKAKEA AQSSPSPQNT LEYHEIVEEE MIRGLQRLGW
401: KKVDVSFHST FWPYLAHNNI HVKSERLYKA GAGVIAHVAD SIKQQESSTF ITASL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)