AT1G29090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine proteinases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT2G34080.1); Has 7810 Blast hits to 7748 proteins in 713 species: Archae - 51; Bacteria - 224; Metazoa - 3316; Fungi - 4; Plants - 1901; Viruses - 135; Other Eukaryotes - 2179 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:10163103..10164385 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39939.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||
| Length | 355 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MCDSFINNKM TSILFMLVSL TILSMNLKVS QATSRVTFHE PIVAEHHQQW MTRFSRVYSD ELEKQMRFDV FKKNLKFIEK FNKKGDRTYK LGVNEFADWT 101: REEFIATHTG LKGVNGIPSS EFVDEMIPSW NWNVSDVAGR ETKDWRYEGA VTPVKYQGQC GCCWAFSSVA AVEGLTKIVG NNLVSLSEQQ LLDCDRERDN 201: GCNGGIMSDA FSYIIKNRGI ASEASYPYQA AEGTCRYNGK PSAWIRGFQT VPSNNERALL EAVSKQPVSV SIDADGPGFM HYSGGVYDEP YCGTNVNHAV 301: TFVGYGTSPE GIKYWLAKNS WGETWGENGY IRIRRDVAWP QGMCGVAQYA FYPVA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)