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AT1G28760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.967
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterized conserved protein (DUF2215)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterized conserved protein (DUF2215); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2215 (InterPro:IPR019358); BEST Arabidopsis thaliana protein match is: Uncharacterized conserved protein (DUF2215) (TAIR:AT3G49840.1); Has 153 Blast hits to 153 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIEUeggNOG:ENOG410ZK22EMBL:AC007508EMBL:CP002684EnsemblPlants:AT1G28760EnsemblPlants:AT1G28760.1entrez:839772
GeneID:839772GO:GO:0016021Gramene:AT1G28760.1hmmpanther:PTHR31587hmmpanther:PTHR31587:SF3HOGENOM:HOG000240284InterPro:IPR019358
KEGG:ath:AT1G28760OMA:CERIQVSPfam:PF10225PhylomeDB:Q9SHQ6PIR:D86412Proteomes:UP000006548RefSeq:NP_174193.2
TAIR:AT1G28760TMHMM:TMhelixUniGene:At.51811UniProt:Q9SHQ6
Coordinates (TAIR10) chr1:+:10103158..10104588
Molecular Weight (calculated) 52920.30 Da
IEP (calculated) 9.81
GRAVY (calculated) 0.17
Length 476 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTSSSFLRL PHRIWFLLPL IVFLLLSYAA ALKSVGPGEP ALNISLRSCE RIQVSGYSRT KLGKFANSLR VNLVPIPEKL HLKIQVCVHR NATLGMCHCE
101: KSNWKNLQSS SVISPYDKQY IDVRFTGSEY QSSRSMITVN VTEEFHQWRI FCLVAGLIVI LLAPVVSSWL PFYYTSSMAV GVFLVVLIII FQVMRLLPTG
201: RKNVMYLAFY GSVVGAGSFI LHQFSMMVNM ILVNFGLSED MYNPVAILVL VGVVITGAAF GFWTVRKFVV SKDGGGVDAS VAQFVKWAMR SVAATFILQS
301: SLDTPMAMGA FVLASLFGFL VSKTKSFVGK SHWLVSAGER RPIMHGRAEF LSRPGGGGLW KSAKSVPSYS GSPSYDVIVS SPSSVNRRIP IGNQDYYSTF
401: HTTPNRKRMS KREYDELTQE TTREAMAGLA ASPGFSDWLV EHADRIKLLP TDSSYDDELG SESDSTGEQS WTRFFW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)