AT1G28760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.937 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Uncharacterized conserved protein (DUF2215) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Uncharacterized conserved protein (DUF2215); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2215 (InterPro:IPR019358); BEST Arabidopsis thaliana protein match is: Uncharacterized conserved protein (DUF2215) (TAIR:AT3G49840.1); Has 153 Blast hits to 153 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:10103158..10104588 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52920.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.81 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.17 | ||||||||||||||||||||||||||||
| Length | 476 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTTSSSFLRL PHRIWFLLPL IVFLLLSYAA ALKSVGPGEP ALNISLRSCE RIQVSGYSRT KLGKFANSLR VNLVPIPEKL HLKIQVCVHR NATLGMCHCE 101: KSNWKNLQSS SVISPYDKQY IDVRFTGSEY QSSRSMITVN VTEEFHQWRI FCLVAGLIVI LLAPVVSSWL PFYYTSSMAV GVFLVVLIII FQVMRLLPTG 201: RKNVMYLAFY GSVVGAGSFI LHQFSMMVNM ILVNFGLSED MYNPVAILVL VGVVITGAAF GFWTVRKFVV SKDGGGVDAS VAQFVKWAMR SVAATFILQS 301: SLDTPMAMGA FVLASLFGFL VSKTKSFVGK SHWLVSAGER RPIMHGRAEF LSRPGGGGLW KSAKSVPSYS GSPSYDVIVS SPSSVNRRIP IGNQDYYSTF 401: HTTPNRKRMS KREYDELTQE TTREAMAGLA ASPGFSDWLV EHADRIKLLP TDSSYDDELG SESDSTGEQS WTRFFW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)