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AT1G28600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24393051 (2015): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28610.2); Has 3320 Blast hits to 3269 proteins in 145 species: Archae - 0; Bacteria - 177; Metazoa - 0; Fungi - 0; Plants - 3140; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G28600-MONOMERBioCyc:ARA:GQT-2629-MONOMEREC:3.1.1.-eggNOG:COG3240eggNOG:ENOG410IKJ0EMBL:AC007508EMBL:AF385739
EMBL:AY087645EMBL:AY133675EMBL:CP002684EnsemblPlants:AT1G28600EnsemblPlants:AT1G28600.1entrez:839760Gene3D:3.40.50.1110
GeneID:839760Genevisible:Q94F40GO:GO:0005576GO:GO:0005618GO:GO:0016042GO:GO:0016788hmmpanther:PTHR22835
hmmpanther:PTHR22835:SF189HOGENOM:HOG000237651InParanoid:Q94F40InterPro:IPR001087InterPro:IPR013830KEGG:ath:AT1G28600OMA:EDYYEEQ
PaxDb:Q94F40Pfam:PF00657Pfam:Q94F40PhylomeDB:Q94F40PRIDE:Q94F40PRO:PR:Q94F40ProteinModelPortal:Q94F40
Proteomes:UP000006548RefSeq:NP_001031103.1RefSeq:NP_174182.1STRING:3702.AT1G28600.1SUPFAM:SSF52266TAIR:AT1G28600UniGene:At.16399
UniProt:Q94F40
Coordinates (TAIR10) chr1:-:10051228..10053073
Molecular Weight (calculated) 43612.60 Da
IEP (calculated) 8.62
GRAVY (calculated) -0.09
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLDSLVIF LFSTLFVTIV SSETPCPNFK SIISFGDSIA DTGNLVGLSD RNQLPVTAFP PYGETFFHHP TGRSCDGRII MDFIAEFVGL PYVPPYFGSK
101: NRNFDKGVNF AVAGATALKS SFLKKRGIQP HTNVSLGVQL KSFKKSLPNL CGSPSDCRDM IGNALILMGE IGGNDYNFPF FNRKPVKEVE ELVPFVIASI
201: SSTITELIGM GGKTFLVPGE FPIGCSVVYL TLYKTSNKDE YDPSTGCLKW LNKFGEYHSE KLKVELNRLR KLYPHVNIIY ADYYNSLLRI FKEPAKFGFM
301: ERPFPACCGI GGPYNFNFTR KCGSVGVKSC KDPSKYVGWD GVHMTEAAYK WIADGILNGP YANPPFDRSC LRSEIKKESL YNQSTLTQAC VKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)