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AT1G28540.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
nucleus 0.986
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J337eggNOG:ENOG410YUV6EMBL:AC007508EMBL:BT025580EMBL:CP002684EnsemblPlants:AT1G28540EnsemblPlants:AT1G28540.1
entrez:839754GeneID:839754GO:GO:0016021Gramene:AT1G28540.1hmmpanther:PTHR37186hmmpanther:PTHR37186:SF1KEGG:ath:AT1G28540
OMA:GLGWIIKPhylomeDB:Q9SHP5PIR:C86411Proteomes:UP000006548RefSeq:NP_564312.1STRING:3702.AT1G28540.1TAIR:AT1G28540
TMHMM:TMhelixUniGene:At.40869UniProt:Q9SHP5
Coordinates (TAIR10) chr1:+:10035696..10036007
Molecular Weight (calculated) 11463.30 Da
IEP (calculated) 10.00
GRAVY (calculated) -0.92
Length 103 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEKSQIPDN NNNTSSSAKK PTPEIGSGSG KRYYNPPESV NPDQATLREQ WKFAIRQYSK WYSHAWGTAI LAGGFFFGLG WIIKGSNPLP SLQSSSKPRD
101: EEK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)