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AT1G28530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK0KeggNOG:ENOG410XU9KEMBL:AK228671EMBL:BT005784EMBL:BT008607EMBL:CP002684EnsemblPlants:AT1G28530
EnsemblPlants:AT1G28530.1entrez:839753ExpressionAtlas:Q84TH8GeneID:839753GO:GO:0009507GO:GO:0010027GO:GO:0090391
GO:GO:1903866Gramene:AT1G28530.1hmmpanther:PTHR35694hmmpanther:PTHR35694:SF1HOGENOM:HOG000238720KEGG:ath:AT1G28530OMA:CHELANN
PhylomeDB:Q84TH8Proteomes:UP000006548RefSeq:NP_174175.2STRING:3702.AT1G28530.1TAIR:AT1G28530UniGene:At.40870UniProt:Q84TH8
Coordinates (TAIR10) chr1:-:10032127..10035496
Molecular Weight (calculated) 68460.80 Da
IEP (calculated) 8.04
GRAVY (calculated) -0.25
Length 614 amino acids
Sequence (TAIR10)
(BLAST)
001: MASISTASSS SSLLFPSRNF KSIPLLPQQR SSVSFVRCFS KNSSTEEDIL RFVAESDGKA LPCVRTYENN SARLSLVGTV AFDQALTAAA ADGGEAADDH
101: LRENVPVMVV ETVFPGGSDP KATVSTRLFL PTKKVKERAK RLRRSLSEDL SSGDLSKNIL AMTFRQVVLR QLWNFQLVLF APGAEREMGD FENPREQVST
201: SFTLSSSDER VISVIAEVIC ISALQSTEKH FLDDYLGKAK FPFMKWLSKR RRIASRDCSV VLHKLFDDEQ NTKLLLEYYQ SRKENFKLAD TKQRSRWWDL
301: SANSKLEKIG GPGFSSWASE YLPAYRLEMD STILADLKLE GWRKSSENKW EVLLTHSQMV GLAEALDIYF EDTYSLPRKQ LPCDVPGNYA NLPNEKKGLS
401: LLKFISVTMA SGIFLLAVSA AAQFCLPQKS ERKYPGKRQE ILWSESELLS HQSSDSSELD SFCGLLVNKL KDAYSWVGEI TLESSIGAWI GEVPDYLKET
501: SRAKSVEDHI VTSSSLLEIL NEDAKASAQD IATYQVVLSS EGKIIGFQPT SRVAVNHWAA NPLARELYGG KKLKPGLIEP GLKSHPPKKV VVLELLMSVN
601: SDRPFALVRP LLPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)