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AT1G28400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33850.1); Has 45374 Blast hits to 18870 proteins in 668 species: Archae - 72; Bacteria - 1460; Metazoa - 1191; Fungi - 1038; Plants - 174; Viruses - 64; Other Eukaryotes - 41375 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J60ReggNOG:ENOG4111D72EMBL:AC010155EMBL:AK226445EMBL:BT000910EMBL:CP002684EnsemblPlants:AT1G28400
EnsemblPlants:AT1G28400.1entrez:839738GeneID:839738Gramene:AT1G28400.1hmmpanther:PTHR35274hmmpanther:PTHR35274:SF2HOGENOM:HOG000115400
KEGG:ath:AT1G28400OMA:FNNNKYDPhylomeDB:Q9SGN8PIR:D86410Proteomes:UP000006548RefSeq:NP_174162.1STRING:3702.AT1G28400.1
TAIR:AT1G28400TMHMM:TMhelixUniGene:At.11832UniGene:At.37039UniProt:Q9SGN8
Coordinates (TAIR10) chr1:-:9972732..9973739
Molecular Weight (calculated) 39656.80 Da
IEP (calculated) 4.52
GRAVY (calculated) -1.63
Length 335 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFSTRGSLL FFFTTLVLLS TQIHARDSYF FGKFHRESPK DQNPNSFIPL ETSEKTTVEE SVLNKKEQEQ DPTFVPESGN GYGLYGHETT YNNNNDNKEE
101: FNNNNKNDEK VNSKTFSTPS LSETEESFNN YEENYPKKTE NYGTKGYNNE EFNNNNNKYD ANFKEEFNNN KYDENYAKEE FNNNNNNNNY NYKYDENVKE
201: ESFPENNEDN KKNVYNSNAY GTELERETPY KGYSHNLERQ GMSDTRFMEK GSYYYDLYND RNHGHYYRKS HSKSPAGYYS SPATETNYEQ QSYSYGNNNE
301: ENSFKDPYNS KWEKNLMNEQ PEEFVEEQGT NQFKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)