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AT1G28360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ERF domain protein 12
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF12). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.
Computational
Description (TAIR10)
ERF domain protein 12 (ERF12); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 4 (TAIR:AT3G15210.1); Has 5550 Blast hits to 5447 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 5541; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
BioGrid:24967eggNOG:ENOG410IZFNeggNOG:ENOG41123N5EMBL:AB055883EMBL:AC010155EMBL:AY099798EMBL:BT002604
EMBL:CP002684EnsemblPlants:AT1G28360EnsemblPlants:AT1G28360.1entrez:839732Gene3D:3.30.730.10GeneID:839732Genevisible:Q94ID6
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006952GO:GO:0009873Gramene:AT1G28360.1
hmmpanther:PTHR31677hmmpanther:PTHR31677:SF25HOGENOM:HOG000237624InParanoid:Q94ID6IntAct:Q94ID6InterPro:IPR001471InterPro:IPR016177
KEGG:ath:AT1G28360OMA:MASTTCAPaxDb:Q94ID6Pfam:PF00847Pfam:Q94ID6Pfscan:PS51032PhylomeDB:Q94ID6
PRIDE:Q94ID6PRINTS:PR00367PRO:PR:Q94ID6PROSITE:PS51032ProteinModelPortal:Q94ID6Proteomes:UP000006548RefSeq:NP_174158.1
SMART:SM00380SMR:Q94ID6STRING:3702.AT1G28360.1SUPFAM:SSF54171TAIR:AT1G28360tair10-symbols:ATERF12tair10-symbols:ERF12
UniGene:At.40906UniProt:Q94ID6
Coordinates (TAIR10) chr1:+:9951934..9952503
Molecular Weight (calculated) 20947.60 Da
IEP (calculated) 9.91
GRAVY (calculated) -0.55
Length 189 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHLPS APSAATAAAN NQPHQHQQLW
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)