AT1G28340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.940 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 4 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 4 (RLP4); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Malectin/receptor-like protein kinase (InterPro:IPR021720), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Di-glucose binding protein with Leucine-rich repeat domain (TAIR:AT1G25570.1); Has 80698 Blast hits to 16677 proteins in 704 species: Archae - 13; Bacteria - 1525; Metazoa - 2886; Fungi - 292; Plants - 72469; Viruses - 0; Other Eukaryotes - 3513 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:9940175..9943252 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68422.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.45 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||
| Length | 626 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMLRFILASL LLSSFSLYSS LARPAPYALR ISCGARKNVR TPPTYALWFK DIAYTGGVPA NATTPTYITP PLKTLRYFPI SEGPNNCYNI VRVPKGHYSV 101: RIFFGLVDQP SFDKEPLFDI SIEGTQISSL KSGWSSQDDQ VFAEALIFLL GGTATICFHS TGHGDPAILS IEILQVDDKA YSFGEGWGQG VILRTATRLT 201: CGTGKSRFDE DYRGDHWGGD RFWNRMRSFG KSADSPRSTE ETIKKASVSP NFYPEGLYQS ALVSTDDQPD LTYSLDVEPN RNYSVWLHFA EIDNTITAEG 301: KRVFDVVING DTFFEDVDII KMSGGRYAAL VLNATVTVSG RTLTVVLQPK AGGHAIINAI EVFEIITAEF KTLRDEVSAL QKMKKALGLP SRFGWNGDPC 401: VPPQHPWSGA NCQLDKNTSR WFIDGLDLDN QGLKGFLPND ISKLKHLQSI NLSENNIRGG IPASLGSVTS LEVLDLSYNS FNGSIPETLG ELTSLRILNL 501: NGNSLSGKVP AAVGGRLLHR ASFNFTDNAG LCGIPGLPAC GPHLSSGAKI GIAFGVSLAF LLIVACAMIW WKRRQNILRA QQIAARGAPY AKKRTHVSHD 601: IQMSRHGHNN HGQARTAVEN GPSLLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)