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AT1G28320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (peroxisomal marker)

GFP-At1g28320
(full-length)
RFP-peroxisomal markeroverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DegP protease 15;
Curator
Summary (TAIR10)
Mutants in this gene are defective in the processing of pre-glyoxysomal malate dehydrogenase (pre-gMDH) to gMDH.
Computational
Description (TAIR10)
DEG15; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: DegP protease 1 (TAIR:AT3G27925.1); Has 3917 Blast hits to 3716 proteins in 1340 species: Archae - 34; Bacteria - 3021; Metazoa - 72; Fungi - 16; Plants - 139; Viruses - 0; Other Eukaryotes - 635 (source: NCBI BLink).
Protein Annotations
BioGrid:24961EC:3.4.21.-eggNOG:COG0265eggNOG:KOG1320EMBL:AC021044EMBL:AY065045EMBL:CP002684
EnsemblPlants:AT1G28320EnsemblPlants:AT1G28320.1entrez:839726GeneID:839726Genevisible:Q8VZD4GO:GO:0004175GO:GO:0004252
GO:GO:0005777GO:GO:0016485Gramene:AT1G28320.1hmmpanther:PTHR21004hmmpanther:PTHR21004:SF0HOGENOM:HOG000030657InParanoid:Q8VZD4
InterPro:IPR009003KEGG:ath:AT1G28320MEROPS:S01.501OMA:IELCAIRPaxDb:Q8VZD4Pfam:PF13365Pfam:Q8VZD4
PIR:E86409PRIDE:Q8VZD4PRO:PR:Q8VZD4ProteinModelPortal:Q8VZD4Proteomes:UP000006548RefSeq:NP_174153.2SMR:Q8VZD4
STRING:3702.AT1G28320.1SUPFAM:SSF50494TAIR:AT1G28320tair10-symbols:DEG15UniGene:At.28635UniProt:Q8VZD4
Coordinates (TAIR10) chr1:-:9920673..9924347
Molecular Weight (calculated) 76129.90 Da
IEP (calculated) 8.02
GRAVY (calculated) 0.02
Length 709 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVSKVVSFS RNFAVLVKVE GPDPKGLKMR KHAFHQYHSG NATLSASGIL LPRDIFLSGE VAAKVLFEAG QDMALVLTVA SVVEPFLTLG HRTSSSISQD
101: PVKLIPGAMI EIMVEGQLKS EKEAPFWVPA QLLSLVDVPV SSAALQSLIE ASSGSKDSGW DIGWSLVSAA NGSQPSINIE HYSKPLMQLD EPHNANFMAK
201: SATRMAILGV PLSLLGQPSM NFASSSSKGD TLVALGSPFG ILSPVNFFNS VSTGSIANSY PSGSLKKSLM IADVRCLPGM EGAPVFAKNG HLIGILIRPL
301: RQKNSGVEIQ LVVPWGAITT ACSHLLLEEP SVEGKASQWG SEVLSVKSDA SIPAQVAIEK AMESVCLITV NDGVWASGII LNEHGLILTN AHLLEPWRYG
401: KGGVYGEGFK PYVLGAEEFS STGSKFWEQK SQTLPRKAPR NHYSSVGENI REYKHNFLQT GHRDIRVRLC HLDSWTWCPA NVVYICKEQL DIALLQLEYV
501: PGKLQPITAN FSSPPLGTTA HVVGHGLFGP RCGLSPSICS GVVAKVVHAK RRLNTQSISQ EVAEFPAMLE TTAAVHPGGS GGAVLNSSGH MIGLVTSNAR
601: HGAGTVIPHL NFSIPCAVLA PIFKFAEDMQ NTTILQTLDQ PSEELSSIWA LMPSLSPKTE QSLPNLPKLL KDGNNKQTKG SQFAKFIAET QDMFVKPTKL
701: SRDVIPSKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)