AT1G28290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : arabinogalactan protein 31 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an atypical arabinogalactan protein that is localized to the plasma membrange. AGP31 is highly expressed in flowers and vascular tissue and is repressed by jasmonic acid. AGP31 may play a role in vascular tissue function during defense and development. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
arabinogalactan protein 31 (AGP31); CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 30 (TAIR:AT2G33790.1); Has 151286 Blast hits to 46459 proteins in 2422 species: Archae - 571; Bacteria - 36421; Metazoa - 49452; Fungi - 15190; Plants - 16901; Viruses - 4924; Other Eukaryotes - 27827 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9889331..9890843 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38490.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.85 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||
| Length | 359 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFIGKSVLV SLVALWCFTS SVFTEEVNHK TQTPSLAPAP APYHHGHHHP HPPHHHHPHP HPHPHPPAKS PVKPPVKAPV SPPAKPPVKP PVYPPTKAPV 101: KPPTKPPVKP PVSPPAKPPV KPPVYPPTKA PVKPPTKPPV KPPVYPPTKA PVKPPTKPPV KPPVYPPTKA PVKPPTKPPV KPPVSPPAKP PVKPPVYPPT 201: KAPVKPPVSP PTKPPVTPPV YPPKFNRSLV AVRGTVYCKS CKYAAFNTLL GAKPIEGATV KLVCKSKKNI TAETTTDKNG YFLLLAPKTV TNFGFRGCRV 301: YLVKSKDYKC SKVSKLFGGD VGAELKPEKK LGKSTVVVNK LVYGLFNVGP FAFNPSCPK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)