AT1G28240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.954 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF616) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF616); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT1G53040.2); Has 322 Blast hits to 322 proteins in 41 species: Archae - 14; Bacteria - 34; Metazoa - 0; Fungi - 4; Plants - 225; Viruses - 1; Other Eukaryotes - 44 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9868521..9871798 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65581.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.63 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||
| Length | 581 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTGLGVRSSS YGSLEKTGLN GVVLPIQITT TTRTKPSKMQ KDREGIVHWI CKFAGRKKVG MLLLFLISAV VFLRVLYVGK GEDSQEGQGP PSLHFNGSSG 101: VNYSNMLQTN EELNMNIGNI SFKAKEVIVF PPPPIHFLGY SLPQGHPCNS FTLPPPPADR KRTGPRPCPV CYLPVEEAVA LMPNAPSFSP VLKNLTYIYE 201: EPLNRETEFG GSDFGGYPTL KHRNDSFDIK ETMSVHCGFV KGPQPGRNTG FDIDEADLLE MKQCRGIVVA SAVFDAFDDV KAPQNISKYA EETVCFYMFV 301: DEETESILKR ERGLDGNKKV GIWRVVVVHN LPYSDGRRNG KVPKLLVHRM FPNARYSLWI DGKLELVVDP YQILERFLWR KNATFAISRH YKRFDVLVEA 401: EANKAAGKYD NASIDFQVDF YKNEGLTPYS VAKLPITSDV PEGCVILREH VPISNLFTCL WFNEVDRFTS RDQISFSTVR DKIAAKTNWT VSMFLDCERR 501: NFVVQRYHRA EQERFARQRP PVPNFPPPPP SPPPPVLISS DLPRKMSSGR ATPPRRRGRD RRSGQRGHRK ANLPVRLPDS A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)